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BioLiP
Download all results in tab-seperated text for 3454 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 117e:A (2.15) BS04 PO4 3.6.1.1 GO:0000287 ... P00817 9878371
    2 117e:A (2.15) BS05 PO4 3.6.1.1 GO:0000287 ... P00817 9878371
    3 117e:B (2.15) BS05 PO4 3.6.1.1 GO:0000287 ... P00817 9878371
    4 1a40:A (1.7) BS01 PO4 ? GO:0006817 ... P0AG82 9865949
    5 1a7k:A (2.8) BS01 PO4 1.2.1.12 GO:0004365 ... Q27890 9571030
    6 1a7k:A (2.8) BS02 PO4 1.2.1.12 GO:0004365 ... Q27890 9571030
    7 1a7k:B (2.8) BS01 PO4 1.2.1.12 GO:0004365 ... Q27890 9571030
    8 1a7k:B (2.8) BS02 PO4 1.2.1.12 GO:0004365 ... Q27890 9571030
    9 1a7k:C (2.8) BS01 PO4 1.2.1.12 GO:0004365 ... Q27890 9571030
    10 1a7k:D (2.8) BS01 PO4 1.2.1.12 GO:0004365 ... Q27890 9571030
    11 1a7k:D (2.8) BS02 PO4 1.2.1.12 GO:0004365 ... Q27890 9571030
    12 1a9o:A (2.0) BS01 PO4 2.4.2.1 GO:0003824 ... P55859 9585525
    13 1a9p:A (2.4) BS01 PO4 2.4.2.1 GO:0003824 ... P55859 9585525
    14 1a9x:A (1.8) BS03 PO4 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 9636022
    15 1a9x:C (1.8) BS03 PO4 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 9636022
    16 1a9x:E (1.8) BS03 PO4 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 9636022
    17 1a9x:G (1.8) BS03 PO4 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 9636022
    18 1ag1:T (2.36) BS01 PO4 5.3.1.1 GO:0004807 ... P04789 2040290
    19 1aj9:A (2.2) BS01 PO4 ? GO:0004601 ... P69905 9761903
    20 1aka:B (2.1) BS01 PO4 2.6.1.1
    2.6.1.7    		 GO:0004069 ... P00508 7819232
    21 1alh:A (2.5) BS02 PO4 3.1.3.1 GO:0000287 ... P00634 7703848
    22 1alh:B (2.5) BS02 PO4 3.1.3.1 GO:0000287 ... P00634 7703848
    23 1ali:A (2.2) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 8520475
    24 1ali:B (2.2) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 8520475
    25 1alj:A (2.6) BS03 PO4 3.1.3.1 GO:0000287 ... P00634 8520475
    26 1alj:B (2.6) BS03 PO4 3.1.3.1 GO:0000287 ... P00634 8520475
    27 1alk:A (2.0) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 2010919
    28 1alk:B (2.0) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 2010919
    29 1ani:A (2.5) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 7473737
    30 1ani:A (2.5) BS05 PO4 3.1.3.1 GO:0000287 ... P00634 7473737
    31 1ani:A (2.5) BS06 PO4 3.1.3.1 GO:0000287 ... P00634 7473737
    32 1ani:B (2.5) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 7473737
    33 1ani:B (2.5) BS05 PO4 3.1.3.1 GO:0000287 ... P00634 7473737
    34 1anj:A (2.3) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 7473737
    35 1anj:A (2.3) BS05 PO4 3.1.3.1 GO:0000287 ... P00634 7473737
    36 1anj:B (2.3) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 7473737
    37 1anj:B (2.3) BS05 PO4 3.1.3.1 GO:0000287 ... P00634 7473737
    38 1aop:A (1.6) BS01 PO4 1.8.1.2 GO:0004783 ... P17846 7569952
    39 1arz:A (2.6) BS01 PO4 1.17.1.8 GO:0005737 ... P04036 9398235
    40 1atr:A (2.34) BS01 PO4 3.6.4.10 GO:0005524 ... P19120 8226982
    41 1b49:A (2.3) BS01 PO4 2.1.2.8 GO:0016740 ... P08773 10064578
    42 1b49:C (2.3) BS01 PO4 2.1.2.8 GO:0016740 ... P08773 10064578
    43 1b4s:A (2.5) BS01 PO4 2.7.4.6 GO:0000166 ... P22887 10200157
    44 1b4s:B (2.5) BS01 PO4 2.7.4.6 GO:0000166 ... P22887 10200157
    45 1b4s:C (2.5) BS01 PO4 2.7.4.6 GO:0000166 ... P22887 10200157
    46 1b8o:A (1.5) BS01 PO4 2.4.2.1 GO:0003824 ... P55859 11170405
    47 1b93:B (1.9) BS01 PO4 4.2.3.3 GO:0005737 ... P0A731 10368300
    48 1bd3:A (1.93) BS01 PO4 2.4.2.9 GO:0000166 ... Q26998 9628859
    49 1bd3:B (1.93) BS01 PO4 2.4.2.9 GO:0000166 ... Q26998 9628859
    50 1bd3:B (1.93) BS02 PO4 2.4.2.9 GO:0000166 ... Q26998 9628859
    51 1bd3:C (1.93) BS01 PO4 2.4.2.9 GO:0000166 ... Q26998 9628859
    52 1bd3:C (1.93) BS02 PO4 2.4.2.9 GO:0000166 ... Q26998 9628859
    53 1bd4:A (2.2) BS01 PO4 2.4.2.9 GO:0000166 ... Q26998 9628859
    54 1bd4:B (2.2) BS01 PO4 2.4.2.9 GO:0000166 ... Q26998 9628859
    55 1bd4:B (2.2) BS02 PO4 2.4.2.9 GO:0000166 ... Q26998 9628859
    56 1bd4:C (2.2) BS01 PO4 2.4.2.9 GO:0000166 ... Q26998 9628859
    57 1bd4:C (2.2) BS02 PO4 2.4.2.9 GO:0000166 ... Q26998 9628859
    58 1bd4:D (2.2) BS01 PO4 2.4.2.9 GO:0000166 ... Q26998 9628859
    59 1bd4:D (2.2) BS02 PO4 2.4.2.9 GO:0000166 ... Q26998 9628859
    60 1bff:A (2.0) BS01 PO4 ? GO:0008083 ... P09038 15299950
    61 1bif:A (2.0) BS01 PO4 2.7.1.105
    3.1.3.46    		 GO:0000166 ... P25114 8805587
    62 1bif:A (2.0) BS02 PO4 2.7.1.105
    3.1.3.46    		 GO:0000166 ... P25114 8805587
    63 1bih:A (3.1) BS01 PO4 ? N/A P25033 9703515
    64 1bih:B (3.1) BS01 PO4 ? N/A P25033 9703515
    65 1bjw:A (1.8) BS01 PO4 2.6.1.1
    2.6.1.78    		 GO:0003824 ... Q56232 10029535
    66 1bjw:B (1.8) BS01 PO4 2.6.1.1
    2.6.1.78    		 GO:0003824 ... Q56232 10029535
    67 1bpd:A (3.6) BS01 PO4 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06766 7516581
    68 1bpi:A (1.09) BS01 PO4 ? GO:0004867 ... P00974 15299722
    69 1brw:A (2.1) BS01 PO4 2.4.2.2 GO:0004645 ... P77836 9817849
    70 1brw:B (2.1) BS01 PO4 2.4.2.2 GO:0004645 ... P77836 9817849
    71 1bup:A (1.7) BS01 PO4 3.6.4.10 GO:0005524 ... P19120 9799500
    72 1bvc:A (1.5) BS01 PO4 ? GO:0004601 ... P02185 7707378
    73 1bvc:A (1.5) BS02 PO4 ? GO:0004601 ... P02185 7707378
    74 1bvc:A (1.5) BS03 PO4 ? GO:0004601 ... P02185 7707378
    75 1bxn:A (2.7) BS01 PO4 4.1.1.39 GO:0000287 ... P0C2C2 10329167
    76 1bxn:C (2.7) BS01 PO4 4.1.1.39 GO:0000287 ... P0C2C2 10329167
    77 1bxn:C (2.7) BS02 PO4 4.1.1.39 GO:0000287 ... P0C2C2 10329167
    78 1bxn:E (2.7) BS01 PO4 4.1.1.39 GO:0000287 ... P0C2C2 10329167
    79 1bxn:G (2.7) BS01 PO4 4.1.1.39 GO:0000287 ... P0C2C2 10329167
    80 1c0e:A (2.2) BS01 PO4 3.1.3.2
    3.1.3.48    		 GO:0003993 ... P11064 10512620
    81 1c0e:B (2.2) BS01 PO4 3.1.3.2
    3.1.3.48    		 GO:0003993 ... P11064 10512620
    82 1c30:A (2.0) BS04 PO4 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10587438
    83 1c30:C (2.0) BS05 PO4 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10587438
    84 1c30:E (2.0) BS05 PO4 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10587438
    85 1c30:G (2.0) BS05 PO4 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10587438
    86 1c3o:A (2.1) BS04 PO4 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10587438
    87 1c3o:C (2.1) BS04 PO4 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10587438
    88 1c3o:E (2.1) BS04 PO4 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10587438
    89 1c3o:G (2.1) BS04 PO4 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10587438
    90 1c3x:A (2.4) BS01 PO4 2.4.2.1 GO:0003824 ... P81989 10600382
    91 1c3x:B (2.4) BS01 PO4 2.4.2.1 GO:0003824 ... P81989 10600382
    92 1c3x:C (2.4) BS01 PO4 2.4.2.1 GO:0003824 ... P81989 10600382
    93 1ce8:A (2.1) BS04 PO4 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    94 1ce8:C (2.1) BS04 PO4 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    95 1ce8:E (2.1) BS04 PO4 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    96 1ce8:G (2.1) BS04 PO4 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    97 1cnq:A (2.27) BS06 PO4 3.1.3.11 GO:0003824 ... P00636 9708979
    98 1cqi:A (3.3) BS01 PO4 6.2.1.5 GO:0000166 ... P0AGE9 10625475
    99 1cqi:D (3.3) BS01 PO4 6.2.1.5 GO:0000166 ... P0AGE9 10625475
    100 1cqj:A (2.9) BS01 PO4 6.2.1.5 GO:0000166 ... P0AGE9 10625475
    101 1cqj:D (2.9) BS01 PO4 6.2.1.5 GO:0000166 ... P0AGE9 10625475
    102 1cs0:A (2.0) BS04 PO4 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10587438
    103 1cs0:C (2.0) BS04 PO4 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10587438
    104 1cs0:E (2.0) BS04 PO4 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10587438
    105 1cs0:E (2.0) BS05 PO4 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10587438
    106 1cs0:G (2.0) BS04 PO4 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10587438
    107 1cu1:A (2.5) BS02 PO4 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0004386 ... P26663 10574797
    108 1d0s:A (1.9) BS01 PO4 2.4.2.21 GO:0000166 ... Q05603 10587435
    109 1d9v:A (1.75) BS01 PO4 ? GO:0006811 ... P35755 11747438
    110 1dam:A (1.8) BS02 PO4 6.3.3.3 GO:0000166 ... P13000 9865950
    111 1dea:A (2.1) BS01 PO4 3.5.99.6 GO:0003824 ... P0A759 8747459
    112 1dea:B (2.1) BS01 PO4 3.5.99.6 GO:0003824 ... P0A759 8747459
    113 1dgk:N (2.8) BS03 PO4 2.7.1.1 GO:0000166 ... P19367 10686099
    114 1dgr:N (2.6) BS01 PO4 ? N/A P50477 11375502
    115 1dgr:V (2.6) BS01 PO4 ? N/A P50477 11375502
    116 1dgr:X (2.6) BS01 PO4 ? N/A P50477 11375502
    117 1dgw:X (1.7) BS01 PO4 ? N/A P50477 11375502
    118 1dks:A (3.2) BS01 PO4 ? GO:0000307 ... P61024 7791211
    119 1dks:B (3.2) BS01 PO4 ? GO:0000307 ... P61024 7791211
    120 1dnl:A (1.8) BS01 PO4 1.4.3.5 GO:0004733 ... P0AFI7 10903950
    121 1dpg:A (2.0) BS01 PO4 1.1.1.363 GO:0004345 ... P11411 7881907
    122 1dpg:A (2.0) BS02 PO4 1.1.1.363 GO:0004345 ... P11411 7881907
    123 1dpg:B (2.0) BS01 PO4 1.1.1.363 GO:0004345 ... P11411 7881907
    124 1dse:A (2.0) BS01 PO4 1.11.1.5 GO:0004601 ... P00431 11170452
    125 1dv1:A (1.9) BS01 PO4 6.3.4.14 GO:0000166 ... P24182 10821865
    126 1dv1:B (1.9) BS01 PO4 6.3.4.14 GO:0000166 ... P24182 10821865
    127 1dxe:A (1.8) BS01 PO4 4.1.2.20 GO:0000287 ... P23522 10921867
    128 1dxe:B (1.8) BS01 PO4 4.1.2.20 GO:0000287 ... P23522 10921867
    129 1e1q:E (2.61) BS01 PO4 7.1.2.2 GO:0000166 ... P00829 10873854
    130 1e3j:A (2.3) BS03 PO4 ? GO:0003939 ... O96496 11237597
    131 1e6a:B (1.9) BS04 PO4 3.6.1.1 GO:0000287 ... P00817 11248042
    132 1e6a:B (1.9) BS05 PO4 3.6.1.1 GO:0000287 ... P00817 11248042
    133 1e6c:A (1.8) BS01 PO4 2.7.1.71 GO:0000166 ... P10880 11369852
    134 1e6c:B (1.8) BS01 PO4 2.7.1.71 GO:0000166 ... P10880 11369852
    135 1e9g:A (1.15) BS03 PO4 3.6.1.1 GO:0000287 ... P00817 11248042
    136 1e9g:A (1.15) BS04 PO4 3.6.1.1 GO:0000287 ... P00817 11248042
    137 1e9g:B (1.15) BS03 PO4 3.6.1.1 GO:0000287 ... P00817 11248042
    138 1e9g:B (1.15) BS04 PO4 3.6.1.1 GO:0000287 ... P00817 11248042
    139 1ed8:A (1.75) BS05 PO4 3.1.3.1 GO:0000287 ... P00634 10873454
    140 1ed8:B (1.75) BS05 PO4 3.1.3.1 GO:0000287 ... P00634 10873454
    141 1ej7:L (2.45) BS01 PO4 4.1.1.39 GO:0000287 ... P00876 10801357
    142 1ej7:L (2.45) BS02 PO4 4.1.1.39 GO:0000287 ... P00876 10801357
    143 1elx:A (2.6) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 9533886
    144 1elx:B (2.6) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 9533886
    145 1ely:A (2.8) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 9533886
    146 1ely:B (2.8) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 9533886
    147 1elz:A (2.8) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 9533886
    148 1elz:B (2.8) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 9533886
    149 1euc:A (2.1) BS01 PO4 6.2.1.4
    6.2.1.5    		 GO:0003824 ... O19069 10873456
    150 1ew2:A (1.82) BS05 PO4 3.1.3.1 GO:0000287 ... P05187 11124260
    151 1ew8:A (2.2) BS03 PO4 3.1.3.1 GO:0000287 ... P00634 10850800
    152 1ew8:B (2.2) BS03 PO4 3.1.3.1 GO:0000287 ... P00634 10850800
    153 1ex2:A (1.85) BS02 PO4 3.6.1.9 GO:0005737 ... Q02169 10841541
    154 1ex2:A (1.85) BS03 PO4 3.6.1.9 GO:0005737 ... Q02169 10841541
    155 1ex2:B (1.85) BS01 PO4 3.6.1.9 GO:0005737 ... Q02169 10841541
    156 1eyi:A (2.32) BS04 PO4 3.1.3.11 GO:0003824 ... P00636 10913263
    157 1eyi:A (2.32) BS05 PO4 3.1.3.11 GO:0003824 ... P00636 10913263
    158 1eyj:A (2.28) BS03 PO4 3.1.3.11 GO:0003824 ... P00636 10913263
    159 1eyj:B (2.28) BS03 PO4 3.1.3.11 GO:0003824 ... P00636 10913263
    160 1eyk:A (2.23) BS03 PO4 3.1.3.11 GO:0003824 ... P00636 10913263
    161 1eyk:B (2.23) BS03 PO4 3.1.3.11 GO:0003824 ... P00636 10913263
    162 1f3f:B (1.85) BS01 PO4 2.7.4.6 GO:0000166 ... P22887 10899107
    163 1f5s:A (1.8) BS01 PO4 3.1.3.3 GO:0000287 ... Q58989 11342136
    164 1f5s:B (1.8) BS01 PO4 3.1.3.3 GO:0000287 ... Q58989 11342136
    165 1f5s:B (1.8) BS03 PO4 3.1.3.3 GO:0000287 ... Q58989 11342136
    166 1f5s:B (1.8) BS04 PO4 3.1.3.3 GO:0000287 ... Q58989 11342136
    167 1fbt:A (2.0) BS01 PO4 2.7.1.105
    3.1.3.46    		 GO:0003824 ... P07953 8634242
    168 1fbt:B (2.0) BS01 PO4 2.7.1.105
    3.1.3.46    		 GO:0003824 ... P07953 8634242
    169 1fj6:A (2.5) BS05 PO4 3.1.3.11 GO:0003824 ... P00636 10998248
    170 1fj6:A (2.5) BS06 PO4 3.1.3.11 GO:0003824 ... P00636 10998248
    171 1fj9:A (2.5) BS04 PO4 3.1.3.11 GO:0003824 ... P00636 10998248
    172 1fj9:B (2.5) BS04 PO4 3.1.3.11 GO:0003824 ... P00636 10998248
    173 1fpp:A (2.75) BS01 PO4 2.5.1.58
    2.5.1.59    		 GO:0004659 ... Q04631 9609683
    174 1fx6:A (2.06) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 11115499
    175 1fx6:B (2.06) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 11115499
    176 1fxf:A (1.85) BS02 PO4 3.1.1.4 GO:0002446 ... P00592 11170377
    177 1fxf:A (1.85) BS03 PO4 3.1.1.4 GO:0002446 ... P00592 11170377
    178 1fxf:A (1.85) BS05 PO4 3.1.1.4 GO:0002446 ... P00592 11170377
    179 1fxf:B (1.85) BS03 PO4 3.1.1.4 GO:0002446 ... P00592 11170377
    180 1fxf:B (1.85) BS04 PO4 3.1.1.4 GO:0002446 ... P00592 11170377
    181 1fxf:B (1.85) BS05 PO4 3.1.1.4 GO:0002446 ... P00592 11170377
    182 1fxp:A (1.8) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 11115499
    183 1fxp:B (1.8) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 11115499
    184 1fxu:A (2.2) BS01 PO4 2.4.2.1 GO:0003824 ... P55859 11134924
    185 1fy6:A (1.89) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 11115499
    186 1fy6:B (1.89) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 11115499
    187 1g0i:A (2.4) BS04 PO4 3.1.3.11
    3.1.3.25    		 GO:0006020 ... Q57573 11170378
    188 1g0i:B (2.4) BS04 PO4 3.1.3.11
    3.1.3.25    		 GO:0006020 ... Q57573 11170378
    189 1g2o:A (1.75) BS01 PO4 2.4.2.1 GO:0003824 ... P9WP01 11444966
    190 1g2o:B (1.75) BS01 PO4 2.4.2.1 GO:0003824 ... P9WP01 11444966
    191 1g2o:C (1.75) BS01 PO4 2.4.2.1 GO:0003824 ... P9WP01 11444966
    192 1g6t:A (1.6) BS01 PO4 2.5.1.19 GO:0003824 ... P0A6D3 11171958
    193 1g76:A (2.2) BS01 PO4 1.4.3.5 GO:0004733 ... P0AFI7 11453690
    194 1g77:A (2.1) BS01 PO4 1.4.3.5 GO:0004733 ... P0AFI7 11453690
    195 1g78:A (2.2) BS01 PO4 1.4.3.5 GO:0004733 ... P0AFI7 11453690
    196 1g79:A (2.0) BS01 PO4 1.4.3.5 GO:0004733 ... P0AFI7 11453690
    197 1gg0:A (3.0) BS01 PO4 2.5.1.55 GO:0005737 ... P0A715 10926505
    198 1git:A (2.6) BS01 PO4 ? GO:0000166 ... P10824 8939752
    199 1gk0:B (2.5) BS01 PO4 3.5.1.93 GO:0016787 ... P07662 11742126
    200 1gk0:D (2.5) BS01 PO4 3.5.1.93 GO:0016787 ... P07662 11742126
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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