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Benchmark datasets for: Roy, Ambrish, and Yang Zhang. "Recognizing protein-ligand binding sites by global structural alignment and local geometry refinement." Structure 20.6 (2012): 987-997.

Benchmark datasets for: Roy, Ambrish, Jianyi Yang, and Yang Zhang. "COFACTOR: an accurate comparative algorithm for structure-based protein function annotation." Nucleic acids research (2012): gks372.

Benchmark datasets for: Chengxin Zhang, Peter L Freddolino, and Yang Zhang. "COFACTOR: improved protein function prediction by combining structure, sequence, and protein-protein interaction information." Nucleic acids research (2017): gkx366.

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