Search found 3 matches

by Wei Liu
Fri May 28, 2021 1:03 pm
Forum: Main Forum
Topic: Usually how long will the I-TASSER standalone package take to predict protein structure?
Replies: 1
Views: 302

Usually how long will the I-TASSER standalone package take to predict protein structure?

Hello, Normally, how long will it take to predict the structure of a protein with 200 aa? It takes me about 6 hours, under the condition that runstyle is gnuparallel and CPUs are two Intel Xeon E5-2637 3.50GHz CPUs, each with 4 physical cores and 8 threads. Is this normal, or should it be faster? I ...
by Wei Liu
Sun May 16, 2021 1:55 pm
Forum: Main Forum
Topic: I-TASSER suit stuck at the step of "running pairing"
Replies: 3
Views: 624

Re: I-TASSER suit stuck at the step of "running pairing"

My sequence is about 1300. And the program doesn't output any not error message. I let it run from Wednesday noon till now and it has reached the step of "4.1 run simulation". May I ask what resource this program needs most, CPU or GPU?

Thanks a lot!
by Wei Liu
Wed May 12, 2021 9:45 pm
Forum: Main Forum
Topic: I-TASSER suit stuck at the step of "running pairing"
Replies: 3
Views: 624

I-TASSER suit stuck at the step of "running pairing"

Hello, I set up the I-TASSER suit(5.1) on my server and try to run one of my sequences whose length is about 1200 but the program seems to stuck in the step of "2.4.2 running pairing" over 7 hours so far. I wonder if it is normal? If not, is there any idea where is the problem gonna be? Th...