Search found 4 matches

by DavidB256
Fri Jul 02, 2021 1:57 am
Forum: Main Forum
Topic: How to specify secondary structure on downloaded I-TASSER?
Replies: 3
Views: 160

Re: How to specify secondary structure on downloaded I-TASSER?

Thank you! Does 1 or 9 represent the highest degree of confidence in secondary structure?
by DavidB256
Tue Jun 29, 2021 6:15 am
Forum: Main Forum
Topic: How to specify secondary structure on downloaded I-TASSER?
Replies: 3
Views: 160

How to specify secondary structure on downloaded I-TASSER?

Hello! I am using I-TASSER downloaded onto my computer and could not figure out how to specify the secondary structure of specific residues in my input sequence, as can be done under "Option III" here: https://zhanglab.dcmb.med.umich.edu/I-TASSER/. Is there a command for including a text f...
by DavidB256
Wed Jun 16, 2021 8:55 pm
Forum: Main Forum
Topic: How much longer does it take for I-TASSER to generate each additional .pdb file?
Replies: 1
Views: 215

How much longer does it take for I-TASSER to generate each additional .pdb file?

Hello! If I choose to generate, for example, 2 .pdb files instead of 1 .pdb file for my protein sequence with I-TASSER, how much longer should I expect for the modeling job to take? I am running I-TASSER on a local supercomputer with 14 CPUs. Thanks!
by DavidB256
Fri Jun 11, 2021 4:05 pm
Forum: Main Forum
Topic: How to directly convert I-TASSER output into .pdb files
Replies: 2
Views: 227

How to directly convert I-TASSER output into .pdb files

Hello! I am using I-TASSER downloaded onto my machine. I am only interested in the .pdb file output from I-TASSER. Is there an easier way to create .pdb from the seq.ss and exp.dat output files than running all of file2html.py? file2html.py gives me IndexError errors. Thanks!!