Search found 31 matches

by jlspzw
Sun Aug 29, 2021 11:36 pm
Forum: Main Forum
Topic: Error running PSSPRED
Replies: 2
Views: 146

Re: Error running PSSPRED

Based on my knowledge, the newest NR database in NCBI is design for most recent version blast, so it is not suitable for the blast we including in the PSSpred package, I suggest you download the raw NR fasta file and format it as blast database format by "fomatdb" commands in blast package...
by jlspzw
Sun Aug 29, 2021 11:30 pm
Forum: Main Forum
Topic: CITASSER errors
Replies: 4
Views: 190

Re: CITASSER errors

Based on your current message, you need install module numpy to your python2, also please make sure you install pytorch in your python3, I suggest you install anaconda2 and anaconda3 python, those python package include most of the useful module, except pytorch you need install by yourself
by jlspzw
Tue Aug 24, 2021 6:59 pm
Forum: Main Forum
Topic: CITASSER errors
Replies: 4
Views: 190

Re: CITASSER errors

Hi Thank you for using our package could you first show the "ls" results of /home/michael/ITLIB and the files in metaclust, uniref90, uniclust etc It seems you also didn't install your own python2 and python3m where python3 is used for deep-learning predictors, you can check the readme abo...
by jlspzw
Fri Aug 13, 2021 9:18 pm
Forum: Main Forum
Topic: CITASSER protein length
Replies: 1
Views: 213

Re: CITASSER protein length

Yes, you can use the standalone package of https://zhanggroup.org/C-I-TASSER/, or you can put your sequence to FUpred server to predicted the domains first, then put each individual domain to C-I-TASSER server, then use DEMO server assembles the domains, all the servers and standalone package can be...
by jlspzw
Fri Aug 13, 2021 9:15 pm
Forum: Main Forum
Topic: More than 750 residues?
Replies: 3
Views: 262

Re: More than 750 residues?

You can try the standalone package of https://zhanggroup.org/C-I-TASSER/
by jlspzw
Wed Aug 04, 2021 9:29 pm
Forum: Main Forum
Topic: Problems with C-QUARK standalone
Replies: 7
Views: 434

Re: Problems with C-QUARK standalone

Let me know what's the error information when you run deepmsa solely.

Thank you
by jlspzw
Sat Jul 24, 2021 6:37 am
Forum: Main Forum
Topic: Jobs running for longer time
Replies: 2
Views: 338

Re: Jobs running for longer time

all your LOMETS jobs have been complete
by jlspzw
Sat Jul 24, 2021 6:36 am
Forum: Main Forum
Topic: ThreaDomEx delay
Replies: 2
Views: 279

Re: ThreaDomEx delay

Instead, you can try https://zhanggroup.org/FUpred/ (contact-map based method) or detect templates from https://zhanggroup.org/LOMETS then check the domain from template alignment
by jlspzw
Sat Jul 24, 2021 6:33 am
Forum: Main Forum
Topic: No Confirmation mail - no results
Replies: 2
Views: 318

Re: No Confirmation mail - no results

your job in C-QUARK server is ready here https://zhanggroup.org/C-QUARK/output/QB1277/, some time your email administer may block our email without any notice to you, you can change to another email, we currently accept any kind of email
by jlspzw
Sat Jul 24, 2021 6:26 am
Forum: Main Forum
Topic: No Confirmation email
Replies: 3
Views: 312

Re: No Confirmation email

Hi, you can try another email, we current accept any kind of email. sometime, your administer of the email may block our email, we found this case serval times from different users.