Search found 157 matches

by xiaogenz
Sat Oct 16, 2021 4:54 pm
Forum: Main Forum
Topic: The N-terminal region of piezo1
Replies: 1
Views: 1142

Re: The N-terminal region of piezo1

Sorry. I am not sure what are you want to know. Do you mean the target is not included in the I-TASSER template?
by xiaogenz
Fri Oct 15, 2021 8:02 pm
Forum: Main Forum
Topic: EDock result
Replies: 3
Views: 1579

Re: EDock result

Thank you for your question. We have check the docking program and the last step by Xscore was broken. The docking scores for binding poses evaluating by XSCORE were not returned. Currently, we pack the binding pose file by SPICKER cluster algorithm. In the result file, the binding sites were save i...
by xiaogenz
Wed Oct 13, 2021 3:29 am
Forum: Main Forum
Topic: MMalign_interface
Replies: 1
Views: 1282

Re: MMalign_interface

I have checked the source code and found that the program may automatically optimize the alignment of the interface residues because there is a part to identify the interface region.
by xiaogenz
Wed Oct 13, 2021 2:26 am
Forum: Main Forum
Topic: TM-align results
Replies: 2
Views: 2023

Re: TM-align results

Here is all of the analog PDBs.
by xiaogenz
Tue Oct 12, 2021 2:33 am
Forum: Main Forum
Topic: ResQ result
Replies: 5
Views: 1974

Re: ResQ result

According to my test, the B-factor will be automatically added to the PDB file.
by xiaogenz
Sun Oct 10, 2021 3:11 am
Forum: Main Forum
Topic: TM-Align
Replies: 1
Views: 1252

Re: TM-Align

RMSD is not the average of Ca distance error. It is the square root of the Ca distance between the two structures divided by the sequence length after the superposition. See https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4321859/
by xiaogenz
Sun Oct 03, 2021 11:39 pm
Forum: Main Forum
Topic: ResQ result
Replies: 5
Views: 1974

Re: ResQ result

We have fixed the problem of the ResQ server. You can try to resubmit your jobs if needed.
by xiaogenz
Sun Oct 03, 2021 5:01 pm
Forum: Main Forum
Topic: COFACTOR RESULTS DELAY
Replies: 1
Views: 1205

Re: COFACTOR RESULTS DELAY

Can you provide your job id?
by xiaogenz
Sat Oct 02, 2021 6:09 pm
Forum: Main Forum
Topic: ResQ result
Replies: 5
Views: 1974

Re: ResQ result

There is a problem for the final result page generation:
Here is the result:
https://zhanggroup.org/ResQ/output/R000944/
https://zhanggroup.org/ResQ/output/R000943/