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Hello! If I choose to generate, for example, 2 .pdb files instead of 1 .pdb file for my protein sequence with I-TASSER, how much longer should I expect for the modeling job to take? I am running I-TASSER on a local supercomputer with 14 CPUs. Thanks!
It depends on the length of the query protein and your running mode (parallel or unparallel ) for the threading and simulation. Results are usually available within 48 hours.