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Structure of PDB 6n9e Chain 1p Binding Site BS01

Receptor Information >6n9e Chain 1p (length=82) Species: 274 (Thermus thermophilus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure] MVKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYDPRKTTPDWLK VDVERARYWLSVGAQPTDTARRLLRQAGVFRQ

Ligand information >6n9e Chain 1a (length=1500) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure] uuggagaguuugauccuggcucagggugaacgcuggcggcgugccuaaga caugcaagucgugcgggccgcggguccguggucagcggcggacgggugag uaacgcgugggugaccuacccggaagagggggacaacccggggaaacucg ggcuaaucccccauguggacccgccccuugggguguguccaaagggcuuu gcccgcuuccggaugggcccgcgucccaucagcuaguuggugggguaaug gcccaccaaggcgacgacggguagccggucugagaggauggccggccaca ggggcacugagacacgggccccacuccuacgggaggcagcaguuaggaau cuuccgcaaugggcgcaagccugacggagcgacgccgcuuggaggaagaa gcccuucgggguguaaacuccugaacccgggacgaaacccccgacgaggg gacugacgguaccgggguaauagcgccggccaacuccgugccagcagccg cgguaauacggagggcgcgagcguuacccggauucacugggcguaaaggg cguguaggcggccuggggcgucccaugugaaagaccacggcucaaccgug ggggagcgugggauacgcucaggcuagacggugggagagggugguggaau ucccggaguagcggugaaaugcgcagauaccgggaggaacgccgauggcg aaggcagccaccugguccacccgugacgcugaggcgcgaaagcgugggga gcaaaccggauuagauacccggguaguccacgcccuaaacgaugcgcgcu aggucucugggucuccugggggccgaagcuaacgcguuaagcgcgccgcc uggggaguacggccgcaaggcugaaacucaaaggaauugacgggggcccg cacaagcgguggagcaugugguuuaauucgaagcaacgcgaagaaccuua ccaggccuugacaugcuagggaacccgggugaaagccuggggugccccgc gaggggagcccuagcacaggugcugcauggccgucgucagcucgugccgu gagguguuggguuaagucccgcaacgagcgcaacccccgccguuaguugc cagcgguucggccgggcacucuaacgggacugcccgcgaaagcgggagga aggaggggacgacgucuggucagcauggcccuuacggccugggcgacaca cgugcuacaaugcccacuacaaagcgaugccacccggcaacggggagcua aucgcaaaaaggugggcccaguucggauuggggucugcaacccgacccca ugaagccggaaucgcuaguaaucgcggaucagccaugccgcggugaauac guucccgggccuuguacacaccgcccgucacgccaugggagcgggcucua cccgaagucgccgggagccuacgggcaggcgccgaggguagggcccguga cuggggcgaagucguaacaagguagcuguaccggaaggugcggcuggauc .....<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<..<..<< <.<<<..<<<..<<.<<<<<<<<..>>>>>>>>.>>>>>......<<... ....<<<<<<<<..<<...<<<<<<<.<<<<<...<<<<<<......>>> >>.>...>>>>>...<<<<<.<<<<<....>>>>>.>>>>>..<<<<... >>>>.>>>>>>>..>>>>>>>>>><<<....<<<..<<<<<<<<...... .>>>>>>>>>>>......>>>..<<<<<<<<....>>>>...>>>>.>>. <<<<<.<.........>>>>>>.<<<<....>>>>...>>>>>>>..... ...<<<....<<<<....>>>>..>>>..>>.>>>>>>..<<<<...... <<<<....>>>>.....>>>>....<<<<<........<<<<.....>>> >..........>>>>>......<<<<<(((...<<<<<.....<<.)))> >.......>>>>>>>>>>..>>>>>>>>>..........<<<((.....< <<<...<<<.<<<<<<.<<<<<<<<<<<......<<<<<<.....>>>>> >....>>>>>>>>..>>>>>>>>>...<<<<<<<<...<<<<<<<....< <<<<<<....<<<......>>>.......>>>>>>>...........<<. ...>>.>>>>>>>..>>>>>.>>>...>>>...>>>>....<<<<<<... <<...<<<<.........>>>>...>>>>>>>>..........<<<<<<. .<<<<<<<<<<...>>>>>>>>>>...<<..))>>.....>>>>>>.>>> .<<<......<<<<....>>>>....>>>..)))).]<<<<<.<<<<<<< .<<.<<<<<<..<<<<<<<<<<......<<........>>.......... <<<<<<<......<<<<<<<<..<<.<<<<....>>>>.>>...<.<... ...>>...>>>>>>>>.<<<.<<<..<<<<<<.......<<<<<<<<<.. ..>>>..<<<<......>>>>..>>>>>>.....<<<<.<<<<<<<..<< <..<<<.....>>>>>>...>>>>>>>.....<<<<<....>>>>>.... ....>>>>.........>>>...>>>>>>>>>...>>>>>>>...>>.>> >>>>>>.....<<<<<<<.....<<<..<<..<<<<....>>>>..>>.. ..>>>.....>>>>>>>......<....<<<<<<<........>>>>>>> ....>.....>>>>>>....<<<<<<<..........>>>>>>>...... >>...>>>>>>>>>>.>>.......<<.<.<<<<.<<<..<<<<<<<<<< <<<...<.<<<<....<<<....>>>.>>>>.>..>>>>>>>>>>>>>.. >>>.>>>>..>.>>.........<<<<<<<<<....>>>>>>>>>.....

Receptor-Ligand Complex Structure Global view Local view Structure summary [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] PDB 6n9e Mechanistic insights into the slow peptide bond formation with D-amino acids in the ribosomal active site. Resolution 3.7 Å Binding residue (original residue number in PDB) M1 K3 R5 L6 R8 G10 S11 K12 H13 N14 H16 Y17 R18 R25 K27 R28 K31 I33 Y38 R42 K43 V62 G63 Q65 T67 D68 T69 R72 R75 F80 R81 Q82 Binding residue (residue number reindexed from 1) M1 K3 R5 L6 R8 G10 S11 K12 H13 N14 H16 Y17 R18 R25 K27 R28 K31 I33 Y38 R42 K43 V62 G63 Q65 T67 D68 T69 R72 R75 F80 R81 Q82

Enzymatic activity Enzyme Commision number ?

Gene Ontology Molecular Function GO:0003735 structural constituent of ribosome

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005840	ribosome
GO:0015935	small ribosomal subunit
GO:1990904	ribonucleoprotein complex

View graph for Molecular Function

View graph for Biological Process

View graph for Cellular Component