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Structure of PDB 7rqe Chain 2s Binding Site BS01

Receptor Information >7rqe Chain 2s (length=83) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure] PRSLKKGVFVDDHLLEKVLELNAKGEKRLIKTWSRRSTIVPEMVGHTIAV YNGKQHVPVYITENMVGHKLGEFAPTRTYRGHG

Ligand information >7rqe Chain 2a (length=1504) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure] uuggagaguuugauccuggcucagggugaacgcuggcggcgugccuaaga caugcaagucgugcgggccgcgggguacuccguggucagcggcggacggg ugaguaacgcgugggugaccuacccggaagagggggacaacccggggaaa cucgggcuaaucccccauguggacccgccccuugggguguguccaaaggg cuuugcccgcuuccggaugggcccgcgucccaucagcuaguugguggggu aauggcccaccaaggcgacgacggguagccggucugagaggauggccggc cacaggggcacugagacacgggccccacuccuacgggaggcagcaguuag gaaucuuccgcaaugggcgcaagccugacggagcgacgccgcuuggagga agaagcccuucgggguguaaacuccugaacccgggacgaaacccccgacg aggggacugacgguaccgggguaauagcgccggccaacuccgugccagca gccgcgguaauacggagggcgcgagcguuacccggauucacugggcguaa agggcguguaggcggccuggggcgucccaugugaaagaccacggcucaac cgugggggagcgugggauacgcucaggcuagacggugggagaggguggug gaauucccggaguagcggugaaaugcgcagauaccgggaggaacgccgau ggcgaaggcagccaccugguccacccgugacgcugaggcgcgaaagcgug gggagcaaaccggauuagauacccggguaguccacgcccuaaacgaugcg cgcuaggucucugggucuccugggggccgaagcuaacgcguuaagcgcgc cgccuggggaguacggccgcaaggcugaaacucaaaggaauugacggggg cccgcacaagcgguggagcaugugguuuaauucgaagcaacgcgaagaac cuuaccaggccuugacaugcuagggaacccgggugaaagccuggggugcc ccgcgaggggagcccuagcacaggugcugcauggccgucgucagcucgug ccgugagguguuggguuaagucccgcaacgagcgcaacccccgccguuag uugccagcgguucggccgggcacucuaacgggacugcccgcgaaagcggg aggaaggaggggacgacgucuggucagcauggcccuuacggccugggcga cacacgugcuacaaugcccacuacaaagcgaugccacccggcaacgggga gcuaaucgcaaaaaggugggcccaguucggauuggggucugcaacccgac cccaugaagccggaaucgcuaguaaucgcggaucagccaugccgcgguga auacguucccgggccuuguacacaccgcccgucacgccaugggagcgggc ucuacccgaagucgccgggagccuacgggcaggcgccgaggguagggccc gugacuggggcgaagucguaacaagguagcuguaccggaaggugcggcug gauc .....<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<..<..<< <.<<<..<<<..<<.<<<<<<<<<....>>>>>>>>>.>>>>>......< <.......<<<<<<<<..<<...<<<<<<<.<<<<<....<<<<<..... .>>>>>.....>>>>>...<<<<<.<<<<<....>>>>>.>>>>>..<<< <...>>>>.>>>>>>>..>>>>>>>>>><<<....<<<..<<<<<<<<.. .....>>>>>>>>>>>......>>>..<<<<<<<<....>>>>...>>>> .>>.<<<<<.<.........>>>>>>.<<<<....>>>>...>>>>>>>. .......<<<....<<<<....>>>>..>>>..>>.>>>>>>..<<<<.. ....<<<<....>>>>.....>>>>....<<<<<........<<<<.... .>>>>..........>>>>>......<<<<<(((...<<<<<.....<<. )))>>.......>>>>>>>>>>..>>>>>>>>>..........<<<((.. ...<<<<...<<<.<<<<<<<.<<<<<<<<<<......<<<<<<.....> >>>>>....>>>>>>>>..>>>>>>>>>...<<<<<<<<...<<<<<<<. ...<<<<<<<.<..<<<......>>>.....>.>>>>>>>.......... .<<....>>.>>>>>>>..>>>>>.>>>...>>>...>>>>....<<<<< <...<<...<<<<.........>>>>...>>>>>>>>..........<<< <<<..<<<<<<<<<<...>>>>>>>>>>...<<..))>>.....>>>>>> .>>>.<<<......<<<<....>>>>....>>>..)))).]<<<<<.<<< <<<<.<<.<<<<<<..<<<<<<<<<<......<<........>>...... ....<<<<<<<......<<<<<<<<..<<<<<<<....>>>>>>>..... <......>....>>>>>>>>.<<<.<<<..<<<<<<.......<<<<<<< <<....>>>..<<<<......>>>>..>>>>>>.....<<<<.<<<<<<< ..<<<..<<<.....>>>>>>...>>>>>>>.....<<<<<....>>>>> ........>>>>.........>>>...>>>>>>>>>...>>>>>>>...> >.>>>>>>>>.....<<<<<<<.....<<<..<<..<<<<....>>>>.. >>....>>>.....>>>>>>>......<....<<<<<<<........>>> >>>>....>.....>>>>>>....<<<<<<<..........>>>>>>>.. ....>>...>>>>>>>>>>.>>....<..<<.<.<<<<.<<<..<<<<<< <<<<<<<...<.<<<<....<<<....>>>.>>>>.>..>>>>>>>>>>> >>..>>>.>>>>..>.>>...>.....<<<<<<<<<....>>>>>>>>>. ....

Receptor-Ligand Complex Structure Global view Local view Structure summary [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] PDB 7rqe Structural basis for the context-specific action of the classic peptidyl transferase inhibitor chloramphenicol. Resolution 2.4 Å Binding residue (original residue number in PDB) P2 R3 S4 L5 K7 F10 H14 W34 R36 R37 Y52 N53 G54 K55 K70 G72 E73 T77 R78 T79 Y80 H83 Binding residue (residue number reindexed from 1) P1 R2 S3 L4 K6 F9 H13 W33 R35 R36 Y51 N52 G53 K54 K69 G71 E72 T76 R77 T78 Y79 H82

Enzymatic activity Enzyme Commision number ?

Gene Ontology Molecular Function GO:0003723 RNA binding GO:0003735 structural constituent of ribosome GO:0019843 rRNA binding

	Biological Process
GO:0000028	ribosomal small subunit assembly
GO:0006412	translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005840	ribosome
GO:0015935	small ribosomal subunit
GO:0022627	cytosolic small ribosomal subunit
GO:1990904	ribonucleoprotein complex

View graph for Molecular Function

View graph for Biological Process

View graph for Cellular Component