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Structure of PDB 4v7e Chain BU Binding Site BS01

Receptor Information >4v7e Chain BU (length=128) Species: 4565 (Triticum aestivum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure] MAAADVAYAPPMKSGKIGFESSQEVQHRIRITLSSKSVKNLEKVCGDLVK GAKDKSLKVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDL VSSADVVKQITSITIEPGVEVEVTISDQ

Ligand information >4v7e Chain Ad (length=1762) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure] uaccugguugauccugccaguagucauaugcuugucucaaagauuaagcc augcaugugcaaguaugaaccaauuugaacugugaaacugcgaauggcuc auuaaaucaguuauaguuuguuugaugguacgugcuacucggauaaccgu aguaauucuagagcuaauacgugcaacaaaccccgacuucugggaggggc gcauuuauuagauaaaaggcugacgcgggcucugcucgcugauccgauga uucaugauaacucgacggaucgcacggccuucgugccggcgacgcaucau ucaaauuucugcccuaucaacuuucgaugguaggauaggggccuaccaug guggugacgggugacggagaauuaggguucgauuccggagagggagccug agaaacggcuaccacauccaaggaaggcagcaggcgcgcaaauuacccaa uccugacacggggagguagugacaauaaauaacaauaccgggcgcauuag ugucugguaauuggaaugaguacaaucuaaaucccuuaacgaggauccau uggagggcaagucuggugccagcagccgcgguaauuccagcuccaauagc guauauuuaaguuguugcaguuaaaaagcucguaguuggaccuugggccg gccggcaucgcgcuccuagccuuaauuggccgggucguguuuccggcauc guuacuuugaagaaauuagagugcucaaagcaagccaucgcucuggauac auuagcaugggauaacaucauaggauuccgguccuauuguguuggccuuc gggaucggaguaaugauuaauagggacagucgggggcauucguauuucau agucagaggugaaauucuuggauuuaugaaagacgaacaacugcgaaagc auuugccaaggauguuuucauuaaucaagaacgaaaguugggggcucgaa gacgaucagauaccguccuagucucaaccauaaacgaugccgaccaggga ucggcggauguugcuuauaggacuccgccggcaccuuaugagaaaucaaa gucuuuggguuccggggggaguauggucgcaaggcugaaacuuaaaggaa uugacggaagggcaccaccaggcguggagccugcgcuuaauuugacucaa cacggggaaacuuaccagguccagacauagcaaggauugacagacugaga gcucuuucuugauucuaugggugguggugcauggccguucuuaguuggug gagcgauuugucugguuaauuccguuaacgaacgagaccucagccugcua acuagcuaugcggagccaucccuccgcagcuagcuucuuagagggacuau ggccguuuaggccacggaaguuugaggcaauaacaggucugucaugcccu uagauguucugggccgcacgcgcgcuacacugauguauucaacgaguaua uagccuuggccgacaggcccggguaaucuugggaaauuucaucgugaugg ggauagaucauugcaauuguuggucuucaacgaggaaugccuaguaagcg cgagucaucagcucgcguugacuacgucccugcccuuuguacacaccgcc cgucgcuccuaccgauugaaugguccggugaaguguucggaucgcggcga cgggggcgguucgccgcccccgacgucgcgagaaguccauugaaccuuau cauuuagaggaagcagaagucguaacaagguuuccguaggugaaccugcg gaaggaucauug ...<<<<....[[[[.>>>>.<<<.<<<<<<...<.<<..<......<<< .<<<..<<...<<.....<<...........>>....>>>>......<<. .......<<<..<<..<<....<<<<<............<<.....<..< <<.....>>>..>......>>..........<<<............>>>. <...<..<<<.....[[[.(((((<<<.........>>>........... ....>>>.>......>........<<<<......>>>.>.....>>>>>. ..>>>>..>>>.<<<....<<<....<<<<<<<<.......>>>>>>>>> >>......>>>...<<<.<<<<....>>>>....>>>.>>.<<.<<<... .......>>>.>>...<<....>>.....>>>>>>.........<<<... .<<<.....>>>..>>>..>>...>.>.....<<.<<.<<.......... ....>>.>>..>>......<<.................>>.........< <<<<((....<.<<<<.....<<..))>>.......>>>>>>>>>>..>> >>>>>>>..........<.<{{.....<.<<...<<<.<.....<.<<<< ..>>>>.>...<..............<<<.....>>>............> <<<<<<.<<.......<<...<.......>...<.......>.....>>. .....>>.>>..>>>>.........<<<<<<<<<<.....))))).]]]. >>>>>>>>>>.......>....<<<<<<.<<...<<<<..<<..<<<<<< <<...<<<......>>>......>>>>>>>>..>>.......<<....>> ...>>>>...>>>>>.>>>...>>>...>>.>....<<<<<<<...<... <<<<.<.....>.>>>>...>>>>>>>>..........<<<.<<.<<<.. <<<<<<<<.<<<........>>>>>>>>>>>..>>>...<<..}}>>... >>.....>>>.>.>.<<<......<<<<....>>>>....>>>..]]]]. .<<<<<.<<<<<<<..<<.<<<<<<..<<<.<<<<.......<<...... ..>>..........<<<<<.<....<<<<<........<<.<<<...... ..>>>.>>......>>>>>...<<.<<<..<<.<<<<<<....<<<.<<< <<....>>>...<<<......>>>...>>.>>>....<<<<<.<<..<<< <..<<......<<<<......>>>>........>>..>>>>.>>.....< <<<<.....>>>>>........>>>>>....>>>.>>>.....>>>>>>> .....>.>>>>>......>>>>.>>>.....<<<<.<.......<<.... ...<<<.<<<<....>>>>.>>>....>>........>.>>>>....... ....<<<<<<..........>>>>>>..........>>>>>>....<<<< <<<<.......>>>>>>>>......>>...>>>>>>>>>>.>>....<.. <<.<..<.<<.<<....<<<<<<<..<<<..<<<<..<...<<...<<<. <<<<<<<<<....>>>>>>>>>.>>>...>>...>..>>>>..>>>..>> >>>>>...>>.>>.>...>.>>...>.....<<<<<<<<<....>>>>>> >>>.........

Receptor-Ligand Complex Structure Global view Local view Structure summary [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] PDB 4v7e Structures of the Sec61 complex engaged in nascent peptide translocation or membrane insertion. Resolution 5.5 Å Binding residue (original residue number in PDB) M1 Y8 T32 V63 M65 P66 T67 K68 V69 H71 I72 R75 K76 C79 E81 G82 N84 W86 R88 K95 R96 I98 Binding residue (residue number reindexed from 1) M1 Y8 T32 V63 M65 P66 T67 K68 V69 H71 I72 R75 K76 C79 E81 G82 N84 W86 R88 K95 R96 I98

Gene Ontology --> -->

UnboundLocalError

Python 3.6.8: /usr/bin/python3 Wed May 14 10:04:55 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

/var/www/html/BioLiP/pdb.cgi in <module>()

1701     title=pdb2title(pdbid)

1702     if bs.startswith("BS"):

=> 1703         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

1704     else:

1705         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '4v7e', asym_id = 'BU', bs = 'BS01', title = 'Structures of the Sec61 complex engaged in nascent peptide translocation or membrane insertion.'

/var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='4v7e', asym_id='BU', bs='BS01', title='Structures of the Sec61 complex engaged in nascent peptide translocation or membrane insertion.')

1326         display_ec(ec,csaOrig,csaRenu)

1327     if go:

=> 1328         display_go(go,uniprot,pdbid,asym_id)

1329     return pubmed,uniprot

1330

global display_go = <function display_go>, go = '0003723,0003735,0005840,0006412,0015935', uniprot = '', pdbid = '4v7e', asym_id = 'BU'

/var/www/html/BioLiP/pdb.cgi in display_go(go='0003723,0003735,0005840,0006412,0015935', uniprot='', pdbid='4v7e', asym_id='BU')

484         '''.replace("$namespace_link",namespace_link

485           ).replace("$namespace",namespace

=>  486           ).replace("$uniprot",u

487         ))

488         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>