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Structure of PDB 6boh Chain CB Binding Site BS01

Receptor Information >6boh Chain CB (length=83) Species: 262724 (Thermus thermophilus HB27) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure] PRSLKKGVFVDDHLLEKVLELNAKGEKRLIKTWSRRSTIVPEMVGHTIAV YNGKQHVPVYITENMVGHKLGEFAPTRTYRGHG

Ligand information >6boh Chain A (length=1507) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure] uuggagaguuugauccuggcucagggugaacgcuggcggcgugccuaaga caugcaagucgugcgggccgcgggguuuuacuccguggucagcggcggac gggugaguaacgcgugggugaccuacccggaagagggggacaacccgggg aaacucgggcuaaucccccauguggacccgccccuugggguguguccaaa gggcuuugcccgcuuccggaugggcccgcgucccaucagcuaguuggugg gguaauggcccaccaaggcgacgacggguagccggucugagaggauggcc ggccacaggggcacugagacacgggccccacuccuacgggaggcagcagu uaggaaucuuccgcaaugggcgcaagccugacggagcgacgccgcuugga ggaagaagcccuucgggguguaaacuccugaacccgggacgaaacccccg aggaggggacugacgguaccgggguaauagcgccggccaacuccgugcca gcagccgcgguaauacggagggcgcgagcguuacccggauucacugggcg uaaagggcguguaggcggccuggggcgucccaugugaaagaccacggcuc aaccgugggggagcgugggauacgcucaggcuagacggugggagagggug guggaauucccggaguagcggugaaaugcgcagauaccgggaggaacgcc gauggcgaaggcagccaccugguccacccgugacgcugaggcgcgaaagc guggggagcaaaccggauuagauacccggguaguccacgcccuaaacgau gcgcgcuaggucucugggucuccugggggccgaagcuaacgcguuaagcg cgccgccuggggaguacggccgcaaggcugaaacucaaaggaauugacgg gggcccgcacaagcgguggagcaugugguuuaauucgaagcaacgcgaag aaccuuaccaggccuugacaugcuagggaacccgggugaaagccuggggu gccccgcgaggggagcccuagcacaggugcugcauggccgucgucagcuc gugccgugagguguuggguuaagucccgcaacgagcgcaacccccgccgu uaguugccagcgguucggccgggcacucuaacgggacugcccgcgaaagc gggaggaaggaggggacgacgucuggucagcauggcccuuacggccuggg cgacacacgugcuacaaugcccacuacaaagcgaugccacccggcaacgg ggagcuaaucgcaaaaaggugggcccaguucggauuggggucugcaaccc gaccccaugaagccggaaucgcuaguaaucgcggaucagccaugccgcgg ugaauacguucccgggccuuguacacaccgcccgucacgccaugggagcg ggcucuacccgaagucgccgggagccuacgggcaggcgccgaggguaggg cccgugacuggggcgaagucguaacaagguagcuguaccggaaggugcgg cuggauc .....<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<..<..<< <.<<<..<<<..<<.<<<<<<<<<<.....>>>>>>>>>>.>>>>>.... ..<<.......<<<<<<<<..<<...<<<<<<<.<<<<<....<<<<<.. ....>>>>>.....>>>>>...<<<<<.<<<<<....>>>>>.>>>>>.. <<<<...>>>>.>>>>>>>..>>>>>>>>>><<<....<<<..<<<<<<< <.......>>>>>>>>>>>......>>>..<<<<<<<<....>>>>...> >>>.>>.<<<<<.<.........>>>>>>.<<<<....>>>>...>>>>> >>........<<<....<<<<....>>>>..>>>..>>.>>>>>>..<<< <......<<<<....>>>>.....>>>>....<<<<<........<<<<. ....>>>>..........>>>>>......<<<<<(((...<<<<<..... <<.)))>>.......>>>>>>>>>>..>>>>>>>>>..........<<<( (.....<<<<...<<<.<<<<<<<.<<<<<<<<<<......<<<<<<... ..>>>>>>....>>>>>>>>..>>>>>>>>>...<<<<<<<<...<<<<< <<....<<<<<<<.<..<<<......>>>.....>.>>>>>>>....... ....<<....>>.>>>>>>>..>>>>>.>>>...>>>...>>>>....<< <<<<...<<...<<<<.<.....>.>>>>...>>>>>>>>.......... <<<<<<..<<<<<<<<<<...>>>>>>>>>>...<<..))>>.....>>> >>>.>>>.<<<......<<<<....>>>>....>>>..)))).]<<<<<. <<<<<<<.<<.<<<<<<..<<<<<<<<........<<........>>... .......<<<<<<<.......<<<<.<<...<<<<<......>>>>>... ...............>>.>>>>..<<<.<<<..<<<<<<.......<<<< <<<<<....>>>..<<<<......>>>>..>>>>>>.....<<<<.<<<< <<<..<<<..<<.......>>>>>...>>>>>>>.....<<<<<....>> >>>........>>>>.........>>>...>>>>>>>>>...>>>>>>>. .....>>>>>>>>.....<<<<<<<.....<<<..<<..<<<<....>>> >..>>....>>>.....>>>>>>>.........<.<<<<<<<........ >>>>>>>>.........>>>>>>....<<<<<<<..........>>>>>> >......>>...>>>>>>>>>>.>>.......<<.<.<<<<.<<<..<<< <<<<<<<<<<...<.<<<<....<<<....>>>.>>>>.>..>>>>>>>> >>>>>..>>>.>>>>..>.>>.........<<<<<<<<<....>>>>>>> >>.....

Receptor-Ligand Complex Structure Global view Local view Structure summary [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] PDB 6boh Conformational Control of Translation Termination on the 70S Ribosome. Resolution 3.4 Å Binding residue (original residue number in PDB) P2 R3 S4 L5 K6 F10 H14 W34 R36 R37 Y52 N53 G54 K70 G72 E73 T77 R78 Y80 H83 Binding residue (residue number reindexed from 1) P1 R2 S3 L4 K5 F9 H13 W33 R35 R36 Y51 N52 G53 K69 G71 E72 T76 R77 Y79 H82

Enzymatic activity Enzyme Commision number ?

Gene Ontology Molecular Function GO:0003723 RNA binding GO:0003735 structural constituent of ribosome GO:0019843 rRNA binding

	Biological Process
GO:0000028	ribosomal small subunit assembly
GO:0006412	translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005840	ribosome
GO:0015935	small ribosomal subunit
GO:0022627	cytosolic small ribosomal subunit
GO:1990904	ribonucleoprotein complex

View graph for Molecular Function

View graph for Biological Process

View graph for Cellular Component