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Structure of PDB 4v9k Chain DO Binding Site BS01

Receptor Information >4v9k Chain DO (length=122) Species: 262724 (Thermus thermophilus HB27) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure] MIQPQTYLEVADNTGARKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRG AVKEGDVVKAVVVRTKKEIKRPDGSAIRFDDNAAVIINNQLEPRGTRVFG PVARELREKGFMKIVSLAPEVL

Ligand information >4v9k Chain CA (length=1511) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure] uggagaguuugauccuggcucagggugaacgcuggcggcgugccuaagac augcaagucgugcgggccgcgggguuuuacuccguggucagcggcggacg ggugaguaacgcgugggugaccuacccggaagagggggacaacccgggga aacucgggcuaaucccccauguggacccgccccuugggguguguccaaag ggcuuugcccgcuuccggaugggcccgcgucccaucagcuaguugguggg guaauggcccaccaaggcgacgacggguagccggucugagaggauggccg gccacaggggcacugagacacgggccccacuccuacgggaggcagcaguu aggaaucuuccgcaaugggcgcaagccugacggagcgacgccgcuuggag gaagaagcccuucgggguguaaacuccugaacccgggacgaaacccccga ggaggggacugacgguaccgggguaauagcgccggccaacuccgugccag cagccgcgguaauacggagggcgcgagcguuacccggauucacugggcgu aaagggcguguaggcggccuggggcgucccaugugaaagaccacggcuca accgugggggagcgugggauacgcucaggcuagacggugggagagggugg uggaauucccggaguagcggugaaaugcgcagauaccgggaggaacgccg auggcgaaggcagccaccugguccacccgugacgcugaggcgcgaaagcg uggggagcaaaccggauuagauacccggguaguccacgcccuaaacgaug cgcgcuaggucucugggucuccugggggccgaagcuaacgcguuaagcgc gccgccuggggaguacggccgcaaggcugaaacucaaaggaauugacggg ggcccgcacaagcgguggagcaugugguuuaauucgaagcaacgcgaaga accuuaccaggccuugacaugcuagggaacccgggugaaagccuggggug ccccgcgaggggagcccuagcacaggugcugcauggccgucgucagcucg ugccgugagguguuggguuaagucccgcaacgagcgcaacccccgccguu aguugccagcgguucggccgggcacucuaacgggacugcccgcgaaagcg ggaggaaggaggggacgacgucuggucagcauggcccuuacggccugggc gacacacgugcuacaaugcccacuacaaagcgaugccacccggcaacggg gagcuaaucgcaaaaaggugggcccaguucggauuggggucugcaacccg accccaugaagccggaaucgcuaguaaucgcggaucagccaugccgcggu gaauacguucccgggccuuguacacaccgcccgucacgccaugggagcgg gcucuacccgaagucgccgggagccuacgggcaggcgccgaggguagggc ccgugacuggggcgaagucguaacaagguagcuguaccggaaggugcggc uggaucaccuc ....<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<..<..<<< .<<<..<<<..<<.<<<<<<<.<<.....>>.>>>>>>>.>>>>>..... .<<.......<<<<<<<<..<<...<<<<<<<.<<<<<....<<<<<... ...>>>>>.....>>>>>....<<<<.<<<<<....>>>>>.>>>>...< <<<...>>>>.>>>>>>>..>>>>>>>>>><<<....<<<..<<<<<<<< .......>>>>>>>>>>>......>>>..<<<<<<<<..[.>>>>...>> >>.>>.<<<<<............>>>>>.<<<<....>>>>...>>>>>> >.....<..<<<....<<<<....>>>>..>>>.>>>.>>>>>>..<<<< ......<<<<<..>>>>>.....>>>>....<<<<<........<<<<.. ...>>>>..........>>>>>......<<<<<(((...<<<<<...... ..))).........>>>>>>>>>>..>>>>>>>>>.......]..<<<(( .....<<<<...<<<.<<<<<<.<<<<<<<<<<<......<<<<<<.... .>>>>>>....>>>>>>>>..>>>>>>>>>...<<<<<<<<...<<<<<< <.<..<<<<<<<....<<<......>>>.......>>>>>>>...>.... ...<<....>>.>>>>>>>..>>>>>.>>>...>>>...>>>>....<<< <<<...<<...<<<<.<.....>.>>>>...>>>>>>>>..........< <<<<<..<<<<<<<<<<...>>>>>>>>>>...<<..))>>.....>>>> >>.>>>.<<<......<<<<....>>>>....>>>..)))).]<<<<<.< <<<<<<.<<.<<<<<<..<<<<<<<<........<<........>>.... ......<<<<<<<......<<<<<<<...<<<<<<<....>>>>>>>... <<<......>>>...>>>>>>>.<<<.<<<..<<<<<<.......<<<<< <<<<....>>>..<<<<......>>>>..>>>>>>.....<<<<.<<<<< <<..<<...<<<.....>>>.>>...>>>>>>>.....<<<<<....>>> >>........>>>>.........>>>...>>>>>>>>>...>>>>>>>.. ....>>>>>>>>.....<<<<<<<.....<<<..<<..<<<<....>>>> ..>>....>>>.....>>>>>>>...........<<<<<<<........> >>>>>>..........>>>>>>....<<<<<<<..........>>>>>>> ......>>...>>>>>>>>>>.>>.......<<.<.<<<<.<<<..<<<< <<<<<<<<<...<.<<<<....<<<....>>>.>>>>.>..>>>>>>>>> >>>>..>>>.>>>>..>.>>.........<<<<<<<<<....>>>>>>>> >..........

Receptor-Ligand Complex Structure Global view Local view Structure summary [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] PDB 4v9k Crystal structures of EF-G-ribosome complexes trapped in intermediate states of translocation. Resolution 3.5 Å Binding residue (original residue number in PDB) N13 P48 R49 T96 R97 Binding residue (residue number reindexed from 1) N13 P48 R49 T96 R97

Enzymatic activity Enzyme Commision number ?

Gene Ontology Molecular Function GO:0003735 structural constituent of ribosome GO:0019843 rRNA binding GO:0070180 large ribosomal subunit rRNA binding

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005840	ribosome
GO:0015934	large ribosomal subunit
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

View graph for Molecular Function

View graph for Biological Process

View graph for Cellular Component