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Structure of PDB 4l71 Chain QQ Binding Site BS01

Receptor Information >4l71 Chain QQ (length=100) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure] PKKVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHDPEEKY KLGDVVEIIESRPISKRKRFRVLRLVESGRMDLVEKYLIRRQNYESLSKR

Ligand information >4l71 Chain QA (length=1500) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure] uggagaguuugauccuggcucagggugaacgcuggcggcgugccuaagac augcaagucgugcgggccgcggggucuccguggucagcggcggacgggug aguaacgcgugggugaccuacccggaagagggggacaacccggggaaacu cgggcuaaucccccauguggacccgccccuugggguguguccaaagggcu uugcccgcuuccggaugggcccgcgucccaucagcuaguuggugggguaa uggcccaccaaggcgacgacggguagccggucugagaggauggccggcca caggggcacugagacacgggccccacuccuacgggaggcagcaguuagga aucuuccgcaaugggcgcaagccugacggagcgacgccgcuuggaggaag aagcccuucgggguguaaacuccugaacccgggacgaaacccccgacgag gggacugacgguaccgggguaauagcgccggccaacuccgugccagcagc cgcgguaauacggagggcgcgagcguuacccggauucacugggcguaaag ggcguguaggcggccuggggcgucccaugugaaagaccacggcucaaccg ugggggagcgugggauacgcucaggcuagacggugggagaggguggugga auucccggaguagcggugaaaugcgcagauaccgggaggaacgccgaugg cgaaggcagccaccugguccacccgugacgcugaggcgcgaaagcguggg gagcaaaccggauuagauacccggguaguccacgcccuaaacgaugcgcg cuaggucucugggucuccugggggccgaagcuaacgcguuaagcgcgccg ccuggggaguacggccgcaaggcugaaacucaaaggaauugacgggggcc cgcacaagcgguggagcaugugguuuaauucgaagcaacgcgaagaaccu uaccaggccuugacaugcuagggaacccgggugaaagccuggggugcccc gcgaggggagcccuagcacaggugcugcauggccgucgucagcucgugcc gugagguguuggguuaagucccgcaacgagcgcaacccccgccguuaguu gccagcgguucggccgggcacucuaacgggacugcccgcgaaagcgggag gaaggaggggacgacgucuggucagcauggcccuuacggccugggcgaca cacgugcuacaaugcccacuacaaagcgaugccacccggcaacggggagc uaaucgcaaaaaggugggcccaguucggauuggggucugcaacccgaccc caugaagccggaaucgcuaguaaucgcggaucagccaugccgcggugaau acguucccgggccuuguacacaccgcccgucacgccaugggagcgggcuc uacccgaagucgccgggagccuacgggcaggcgccgaggguagggcccgu gacuggggcgaagucguaacaagguagcuguaccggaaggugcggcugga ....<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<..<..<<< .<<<..<<<..<<.<<<<<<<<<...>>>>>>>>>.>>>>>......<<. ......<<<<<<<<..<<...<<<<<<<.<<<<<....<<<<<......> >>>>.....>>>>>...<<<<<.<<<<<....>>>>>.>>>>>..<<<<. ..>>>>.>>>>>>>..>>>>>>>>>><<<....<<<..<<<<<<<<.... ...>>>>>>>>>>>......>>>..<<<<<<<<....>>>>...>>>>.> >.<<<<<.<.........>>>>>>.<<<<....>>>>...>>>>>>>... .....<<<....<<<<....>>>>..>>>..>>.>>>>>>..<<<<.... ..<<<<....>>>>.....>>>>....<<<<<........<<<<.....> >>>..........>>>>>......<<<<<(((...<<<<<.....<<.)) )>>.......>>>>>>>>>>..>>>>>>>>>..........<<<((.... .<<<<...<<<.<<<<<<<.<<<<<<<<<<......<<<<<<.....>>> >>>....>>>>>>>>..>>>>>>>>>...<<<<<<<<...<<<<<<<... .<<<<<<<.<..<<<......>>>.....>.>>>>>>>...........< <....>>.>>>>>>>..>>>>>.>>>...>>>...>>>>....<<<<<<. ..<<...<<<<.<.....>.>>>>...>>>>>>>>..........<<<<< <..<<<<<<<<<<...>>>>>>>>>>...<<..))>>.....>>>>>>.> >>.<<<......<<<<....>>>>....>>>..)))).]<<<<<.<<<<< <<.<<.<<<<<<..<<<<<<<<<<......<<........>>........ ..<<<<<<<......<<<<<<<<..<<<<<<<....>>>>>>>...<<<. .....>>>..>>>>>>>>.<<<.<<<..<<<<<<.......<<<<<<<<< ....>>>..<<<<......>>>>..>>>>>>.....<<<<.<<<<<<<.. .<...<<<.....>>>.>....>>>>>>>.....<<<<<....>>>>>.. ......>>>>.........>>>...>>>>>>>>>...>>>>>>>...>>. >>>>>>>>.....<<<<<<<.....<<<..<<..<<<<....>>>>..>> ....>>>.....>>>>>>>...........<<<<<<<........>>>>> >>..........>>>>>>....<<<<<<<..........>>>>>>>.... ..>>...>>>>>>>>>>.>>....<..<<.<.<<<<.<<<..<<<<<<<< <<<<<...<.<<<<....<<<....>>>.>>>>.>..>>>>>>>>>>>>> ..>>>.>>>>..>.>>...>.....<<<<<<<<<....>>>>>>>>>...

Receptor-Ligand Complex Structure Global view Local view Structure summary [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] PDB 4l71 Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops. Resolution 3.9 Å Binding residue (original residue number in PDB) P2 K3 S12 K14 M15 Q16 K17 R25 L31 Y32 K34 K37 R38 S39 K40 K41 Y42 E61 R63 P64 I65 S66 K67 R68 K69 R70 R72 K87 R91 N94 Y95 L98 K100 Binding residue (residue number reindexed from 1) P1 K2 S11 K13 M14 Q15 K16 R24 L30 Y31 K33 K36 R37 S38 K39 K40 Y41 E60 R62 P63 I64 S65 K66 R67 K68 R69 R71 K86 R90 N93 Y94 L97 K99

Enzymatic activity Enzyme Commision number ?

Gene Ontology Molecular Function GO:0003735 structural constituent of ribosome GO:0019843 rRNA binding

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005840	ribosome
GO:0022627	cytosolic small ribosomal subunit
GO:1990904	ribonucleoprotein complex

View graph for Molecular Function

View graph for Biological Process

View graph for Cellular Component