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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 182604 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 117e:A (2.15) BS01 MN 3.6.1.1 GO:0000287 ... P00817 9878371
    2 117e:A (2.15) BS02 MN 3.6.1.1 GO:0000287 ... P00817 9878371
    3 117e:A (2.15) BS03 MN 3.6.1.1 GO:0000287 ... P00817 9878371
    4 117e:B (2.15) BS01 MN 3.6.1.1 GO:0000287 ... P00817 9878371
    5 117e:B (2.15) BS02 MN 3.6.1.1 GO:0000287 ... P00817 9878371
    6 117e:B (2.15) BS03 MN 3.6.1.1 GO:0000287 ... P00817 9878371
    7 117e:B (2.15) BS04 MN 3.6.1.1 GO:0000287 ... P00817 9878371
    8 121p:A (1.54) BS01 MG 3.6.5.2 GO:0003924 ... P01112 N/A
    9 12ca:A (2.4) BS01 ZN 4.2.1.1 GO:0002009 ... P00918 1910042
    10 193l:A (1.33) BS01 NA 3.2.1.17 GO:0003796 ... P00698 15299672
    11 194l:A (1.4) BS01 NA 3.2.1.17 GO:0003796 ... P00698 15299672
    12 1a0b:A (2.06) BS01 ZN 2.7.13.3 GO:0000160 ... P0AEC3 9054511
    13 1a0c:A (2.5) BS01 CO 5.3.1.5 GO:0000287 ... P19148 N/A
    14 1a0c:A (2.5) BS02 CO 5.3.1.5 GO:0000287 ... P19148 N/A
    15 1a0c:B (2.5) BS01 CO 5.3.1.5 GO:0000287 ... P19148 N/A
    16 1a0c:B (2.5) BS02 CO 5.3.1.5 GO:0000287 ... P19148 N/A
    17 1a0c:C (2.5) BS01 CO 5.3.1.5 GO:0000287 ... P19148 N/A
    18 1a0c:C (2.5) BS02 CO 5.3.1.5 GO:0000287 ... P19148 N/A
    19 1a0c:D (2.5) BS01 CO 5.3.1.5 GO:0000287 ... P19148 N/A
    20 1a0c:D (2.5) BS02 CO 5.3.1.5 GO:0000287 ... P19148 N/A
    21 1a0d:A (3.0) BS01 MN 5.3.1.5 GO:0000287 ... P54273 N/A
    22 1a0d:A (3.0) BS02 MN 5.3.1.5 GO:0000287 ... P54273 N/A
    23 1a0d:B (3.0) BS01 MN 5.3.1.5 GO:0000287 ... P54273 N/A
    24 1a0d:B (3.0) BS02 MN 5.3.1.5 GO:0000287 ... P54273 N/A
    25 1a0d:C (3.0) BS01 MN 5.3.1.5 GO:0000287 ... P54273 N/A
    26 1a0d:C (3.0) BS02 MN 5.3.1.5 GO:0000287 ... P54273 N/A
    27 1a0d:D (3.0) BS01 MN 5.3.1.5 GO:0000287 ... P54273 N/A
    28 1a0d:D (3.0) BS02 MN 5.3.1.5 GO:0000287 ... P54273 N/A
    29 1a0e:A (2.7) BS01 CO 5.3.1.5 GO:0000287 ... P45687 N/A
    30 1a0e:A (2.7) BS02 CO 5.3.1.5 GO:0000287 ... P45687 N/A
    31 1a0e:D (2.7) BS01 CO 5.3.1.5 GO:0000287 ... P45687 N/A
    32 1a0e:D (2.7) BS02 CO 5.3.1.5 GO:0000287 ... P45687 N/A
    33 1a0j:A (1.7) BS01 CA 3.4.21.4 GO:0004252 ... P35033 9757092
    34 1a0o:A (2.95) BS01 MN N/A GO:0000156 ... P0AE67 9437425
    35 1a0o:C (2.95) BS01 MN N/A GO:0000156 ... P0AE67 9437425
    36 1a0o:E (2.95) BS01 MN N/A GO:0000156 ... P0AE67 9437425
    37 1a0o:G (2.95) BS01 MN N/A GO:0000156 ... P0AE67 9437425
    38 1a0q:H (2.3) BS01 ZN N/A N/A P01869 9753552
    39 1a0q:L (2.3) BS01 ZN N/A GO:0005576 ... P01837 9753552
    40 1a0s:P (2.4) BS01 CA N/A GO:0015288 ... P22340 9437428
    41 1a0s:Q (2.4) BS01 CA N/A GO:0015288 ... P22340 9437428
    42 1a0s:R (2.4) BS01 CA N/A GO:0015288 ... P22340 9437428
    43 1a0t:P (2.4) BS04 CA N/A GO:0015288 ... P22340 9437428
    44 1a0t:Q (2.4) BS04 CA N/A GO:0015288 ... P22340 9437428
    45 1a0t:R (2.4) BS04 CA N/A GO:0015288 ... P22340 9437428
    46 1a14:N (2.5) BS01 CA 3.2.1.18 GO:0004308 ... P03472 9642070
    47 1a16:A (2.3) BS03 MN 3.4.11.9 GO:0004177 ... P15034 9520390
    48 1a16:A (2.3) BS04 MN 3.4.11.9 GO:0004177 ... P15034 9520390
    49 1a1f:A (2.1) BS03 ZN N/A N/A P08046 9562555
    50 1a1f:A (2.1) BS04 ZN N/A N/A P08046 9562555
    51 1a1f:A (2.1) BS05 ZN N/A N/A P08046 9562555
    52 1a1g:A (1.9) BS03 ZN N/A N/A P08046 9562555
    53 1a1g:A (1.9) BS04 ZN N/A N/A P08046 9562555
    54 1a1g:A (1.9) BS05 ZN N/A N/A P08046 9562555
    55 1a1h:A (1.6) BS03 ZN N/A N/A P08046 9562555
    56 1a1h:A (1.6) BS04 ZN N/A N/A P08046 9562555
    57 1a1h:A (1.6) BS05 ZN N/A N/A P08046 9562555
    58 1a1i:A (1.6) BS03 ZN N/A N/A P08046 9562555
    59 1a1i:A (1.6) BS04 ZN N/A N/A P08046 9562555
    60 1a1i:A (1.6) BS05 ZN N/A N/A P08046 9562555
    61 1a1j:A (2.0) BS03 ZN N/A N/A P08046 9562555
    62 1a1j:A (2.0) BS04 ZN N/A N/A P08046 9562555
    63 1a1j:A (2.0) BS05 ZN N/A N/A P08046 9562555
    64 1a1k:A (1.9) BS03 ZN N/A N/A P08046 9562555
    65 1a1k:A (1.9) BS04 ZN N/A N/A P08046 9562555
    66 1a1k:A (1.9) BS05 ZN N/A N/A P08046 9562555
    67 1a1l:A (2.3) BS03 ZN N/A N/A P08046 9562555
    68 1a1l:A (2.3) BS04 ZN N/A N/A P08046 9562555
    69 1a1l:A (2.3) BS05 ZN N/A N/A P08046 9562555
    70 1a1r:A (2.5) BS02 ZN 2.7.7.48
    3.4.21.98
    3.6.1.15
    3.6.4.13    		 GO:0006508 ... P27958 8861917
    71 1a1r:B (2.5) BS03 ZN 2.7.7.48
    3.4.21.98
    3.6.1.15
    3.6.4.13    		 GO:0006508 ... P27958 8861917
    72 1a1t:A (-1.00) BS02 ZN N/A GO:0003676 ... Q75677 9430589
    73 1a1t:A (-1.00) BS03 ZN N/A GO:0003676 ... Q75677 9430589
    74 1a25:A (2.7) BS01 CA 2.7.11.13 N/A P68403 9817842
    75 1a25:A (2.7) BS02 CA 2.7.11.13 N/A P68403 9817842
    76 1a25:A (2.7) BS03 CA 2.7.11.13 N/A P68403 9817842
    77 1a25:B (2.7) BS01 CA 2.7.11.13 N/A P68403 9817842
    78 1a25:B (2.7) BS02 CA 2.7.11.13 N/A P68403 9817842
    79 1a25:B (2.7) BS03 CA 2.7.11.13 N/A P68403 9817842
    80 1a29:A (2.74) BS01 CA N/A GO:0000922 ... P62157 9799490
    81 1a29:A (2.74) BS02 CA N/A GO:0000922 ... P62157 9799490
    82 1a29:A (2.74) BS03 CA N/A GO:0000922 ... P62157 9799490
    83 1a29:A (2.74) BS04 CA N/A GO:0000922 ... P62157 9799490
    84 1a2b:A (2.4) BS01 MG 3.6.5.2 GO:0000166 ... P61586 9545299
    85 1a2p:C (1.5) BS01 ZN 3.1.27.- GO:0003723 ... P00648 10089345
    86 1a2q:A (1.8) BS01 CA 3.4.21.62 GO:0004252 ... P00782 2684274
    87 1a2q:A (1.8) BS02 CA 3.4.21.62 GO:0004252 ... P00782 2684274
    88 1a2t:A (1.96) BS01 CA 3.1.31.1 GO:0003676 ... P00644 8762134
    89 1a2u:A (2.0) BS01 CA 3.1.31.1 GO:0003676 ... P00644 8762134
    90 1a2v:A (2.4) BS01 CU 1.4.3.21 GO:0005507 ... P12807 15299901
    91 1a2v:B (2.4) BS01 CU 1.4.3.21 GO:0005507 ... P12807 15299901
    92 1a2v:C (2.4) BS01 CU 1.4.3.21 GO:0005507 ... P12807 15299901
    93 1a2v:D (2.4) BS01 CU 1.4.3.21 GO:0005507 ... P12807 15299901
    94 1a2v:E (2.4) BS01 CU 1.4.3.21 GO:0005507 ... P12807 15299901
    95 1a2v:F (2.4) BS01 CU 1.4.3.21 GO:0005507 ... P12807 15299901
    96 1a2x:A (2.3) BS01 CA N/A GO:0005509 ... P02586 9560191
    97 1a2x:A (2.3) BS02 CA N/A GO:0005509 ... P02586 9560191
    98 1a3t:A (2.1) BS01 CA 3.1.31.1 GO:0003676 ... P00644 9260275
    99 1a3u:A (2.05) BS01 CA 3.1.31.1 GO:0003676 ... P00644 9260275
    100 1a3v:A (2.2) BS01 CA 3.1.31.1 GO:0003676 ... P00644 9260275
    101 1a3w:A (3.0) BS03 MN 2.7.1.40 GO:0000166 ... P00549 9519410
    102 1a3w:B (3.0) BS03 MN 2.7.1.40 GO:0000166 ... P00549 9519410
    103 1a3x:A (3.0) BS02 MN 2.7.1.40 GO:0000166 ... P00549 9519410
    104 1a3x:B (3.0) BS02 MN 2.7.1.40 GO:0000166 ... P00549 9519410
    105 1a3z:A (1.9) BS01 CU1 N/A GO:0005507 ... P0C918 N/A
    106 1a42:A (2.25) BS01 ZN 4.2.1.1 GO:0002009 ... P00918 9541386
    107 1a47:A (2.56) BS06 CA 2.4.1.19 GO:0003824 ... P26827 9488711
    108 1a47:A (2.56) BS07 CA 2.4.1.19 GO:0003824 ... P26827 9488711
    109 1a49:A (2.1) BS02 MG 2.7.1.40 GO:0000166 ... P11974 9572839
    110 1a49:B (2.1) BS02 MG 2.7.1.40 GO:0000166 ... P11974 9572839
    111 1a49:C (2.1) BS02 MG 2.7.1.40 GO:0000166 ... P11974 9572839
    112 1a49:D (2.1) BS02 MG 2.7.1.40 GO:0000166 ... P11974 9572839
    113 1a49:E (2.1) BS02 MG 2.7.1.40 GO:0000166 ... P11974 9572839
    114 1a49:F (2.1) BS02 MG 2.7.1.40 GO:0000166 ... P11974 9572839
    115 1a49:G (2.1) BS02 MG 2.7.1.40 GO:0000166 ... P11974 9572839
    116 1a49:H (2.1) BS02 MG 2.7.1.40 GO:0000166 ... P11974 9572839
    117 1a4a:A (1.89) BS01 CU N/A GO:0005507 ... P00280 9520385
    118 1a4a:B (1.89) BS01 CU N/A GO:0005507 ... P00280 9520385
    119 1a4b:A (1.91) BS01 CU N/A GO:0005507 ... P00280 9520385
    120 1a4b:B (1.91) BS01 CU N/A GO:0005507 ... P00280 9520385
    121 1a4c:A (2.45) BS01 CU N/A GO:0005507 ... P00280 9520385
    122 1a4c:B (2.45) BS01 CU N/A GO:0005507 ... P00280 9520385
    123 1a4c:C (2.45) BS01 CU N/A GO:0005507 ... P00280 9520385
    124 1a4c:D (2.45) BS01 CU N/A GO:0005507 ... P00280 9520385
    125 1a4g:A (2.2) BS01 CA 3.2.1.18 GO:0004308 ... P27907 9526556
    126 1a4g:B (2.2) BS01 CA 3.2.1.18 GO:0004308 ... P27907 9526556
    127 1a4l:A (2.6) BS01 ZN 3.5.4.4 GO:0000255 ... P03958 9622483
    128 1a4l:B (2.6) BS01 ZN 3.5.4.4 GO:0000255 ... P03958 9622483
    129 1a4l:C (2.6) BS01 ZN 3.5.4.4 GO:0000255 ... P03958 9622483
    130 1a4l:D (2.6) BS01 ZN 3.5.4.4 GO:0000255 ... P03958 9622483
    131 1a4m:A (1.95) BS01 ZN 3.5.4.4 GO:0000255 ... P03958 9622483
    132 1a4m:B (1.95) BS01 ZN 3.5.4.4 GO:0000255 ... P03958 9622483
    133 1a4m:C (1.95) BS01 ZN 3.5.4.4 GO:0000255 ... P03958 9622483
    134 1a4m:D (1.95) BS01 ZN 3.5.4.4 GO:0000255 ... P03958 9622483
    135 1a4q:A (1.9) BS01 CA 3.2.1.18 GO:0004308 ... P27907 9526556
    136 1a4q:B (1.9) BS01 CA 3.2.1.18 GO:0004308 ... P27907 9526556
    137 1a4v:A (1.8) BS01 CA 2.4.1.22 GO:0000139 ... P00709 9537992
    138 1a4v:A (1.8) BS02 CA 2.4.1.22 GO:0000139 ... P00709 9537992
    139 1a5n:C (2.4) BS01 NI 3.5.1.5 GO:0005515 ... P18314 9558361
    140 1a5n:C (2.4) BS02 NI 3.5.1.5 GO:0005515 ... P18314 9558361
    141 1a5o:C (2.5) BS01 NI 3.5.1.5 GO:0005515 ... P18314 9558361
    142 1a5o:C (2.5) BS02 NI 3.5.1.5 GO:0005515 ... P18314 9558361
    143 1a5t:A (2.2) BS01 ZN 2.7.7.7 GO:0003677 ... P28631 9363942
    144 1a5u:A (2.35) BS02 MG 2.7.1.40 GO:0000166 ... P11974 9572839
    145 1a5u:B (2.35) BS02 MG 2.7.1.40 GO:0000166 ... P11974 9572839
    146 1a5u:C (2.35) BS02 MG 2.7.1.40 GO:0000166 ... P11974 9572839
    147 1a5u:D (2.35) BS02 MG 2.7.1.40 GO:0000166 ... P11974 9572839
    148 1a5u:E (2.35) BS02 MG 2.7.1.40 GO:0000166 ... P11974 9572839
    149 1a5u:F (2.35) BS02 MG 2.7.1.40 GO:0000166 ... P11974 9572839
    150 1a5u:G (2.35) BS02 MG 2.7.1.40 GO:0000166 ... P11974 9572839
    151 1a5u:H (2.35) BS02 MG 2.7.1.40 GO:0000166 ... P11974 9572839
    152 1a5v:A (1.9) BS01 MN 2.7.7.49
    2.7.7.7
    3.1.26.4    		 GO:0003676 ... O92956 9560188
    153 1a65:A (2.23) BS01 CU 1.10.3.2 GO:0005507 ... Q9Y780 9546223
    154 1a65:A (2.23) BS02 CU 1.10.3.2 GO:0005507 ... Q9Y780 9546223
    155 1a65:A (2.23) BS03 CU 1.10.3.2 GO:0005507 ... Q9Y780 9546223
    156 1a6b:B (-1.00) BS02 ZN N/A N/A P03332 10529168
    157 1a6f:A (2.6) BS01 ZN 3.1.26.5 GO:0000049 ... P25814 9563955
    158 1a6q:A (2.0) BS01 MN 3.1.3.16 GO:0000122 ... P35813 9003755
    159 1a6q:A (2.0) BS02 MN 3.1.3.16 GO:0000122 ... P35813 9003755
    160 1a6y:A (2.3) BS03 ZN N/A GO:0003700 ... P20393 9660968
    161 1a6y:A (2.3) BS04 ZN N/A GO:0003700 ... P20393 9660968
    162 1a6y:B (2.3) BS03 ZN N/A GO:0003700 ... P20393 9660968
    163 1a6y:B (2.3) BS04 ZN N/A GO:0003700 ... P20393 9660968
    164 1a71:A (2.0) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 9649310
    165 1a71:A (2.0) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 9649310
    166 1a71:B (2.0) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 9649310
    167 1a71:B (2.0) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 9649310
    168 1a72:A (2.6) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 9649310
    169 1a72:A (2.6) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 9649310
    170 1a73:A (1.8) BS04 ZN 3.1.-.- GO:0004518 ... Q94702 9665136
    171 1a73:A (1.8) BS05 ZN 3.1.-.- GO:0004518 ... Q94702 9665136
    172 1a73:B (1.8) BS04 ZN 3.1.-.- GO:0004518 ... Q94702 9665136
    173 1a73:B (1.8) BS05 ZN 3.1.-.- GO:0004518 ... Q94702 9665136
    174 1a74:A (2.2) BS03 ZN 3.1.-.- GO:0004518 ... Q94702 9665136
    175 1a74:A (2.2) BS04 ZN 3.1.-.- GO:0004518 ... Q94702 9665136
    176 1a74:B (2.2) BS03 ZN 3.1.-.- GO:0004518 ... Q94702 9665136
    177 1a74:B (2.2) BS04 ZN 3.1.-.- GO:0004518 ... Q94702 9665136
    178 1a75:A (1.9) BS01 CA N/A GO:0005509 ... P02621 N/A
    179 1a75:A (1.9) BS02 CA N/A GO:0005509 ... P02621 N/A
    180 1a75:B (1.9) BS01 CA N/A GO:0005509 ... P02621 N/A
    181 1a75:B (1.9) BS02 CA N/A GO:0005509 ... P02621 N/A
    182 1a76:A (2.0) BS01 MN 3.1.-.- GO:0000287 ... Q58839 9699635
    183 1a77:A (2.0) BS01 MG 3.1.-.- GO:0000287 ... Q58839 9699635
    184 1a7i:A (-1.00) BS01 ZN N/A N/A Q05158 9585524
    185 1a7i:A (-1.00) BS02 ZN N/A N/A Q05158 9585524
    186 1a7t:A (1.85) BS01 ZN 3.5.2.6 GO:0008270 ... P25910 9578564
    187 1a7t:A (1.85) BS02 ZN 3.5.2.6 GO:0008270 ... P25910 9578564
    188 1a7t:B (1.85) BS01 ZN 3.5.2.6 GO:0008270 ... P25910 9578564
    189 1a7t:B (1.85) BS02 ZN 3.5.2.6 GO:0008270 ... P25910 9578564
    190 1a7w:A (1.55) BS01 ZN N/A GO:0003677 ... P19267 11021968
    191 1a82:A (1.8) BS01 MG 6.3.3.3 GO:0000166 ... P13000 9576910
    192 1a85:A (2.0) BS01 CA 3.4.24.34 GO:0004222 ... P22894 9655333
    193 1a85:A (2.0) BS02 CA 3.4.24.34 GO:0004222 ... P22894 9655333
    194 1a85:A (2.0) BS03 ZN 3.4.24.34 GO:0004222 ... P22894 9655333
    195 1a85:A (2.0) BS04 ZN 3.4.24.34 GO:0004222 ... P22894 9655333
    196 1a86:A (2.0) BS02 CA 3.4.24.34 GO:0004222 ... P22894 9655333
    197 1a86:A (2.0) BS03 CA 3.4.24.34 GO:0004222 ... P22894 9655333
    198 1a86:A (2.0) BS04 ZN 3.4.24.34 GO:0004222 ... P22894 9655333
    199 1a86:A (2.0) BS05 ZN 3.4.24.34 GO:0004222 ... P22894 9655333
    200 1a8a:A (1.9) BS01 CA N/A GO:0001786 ... P14668 7583670
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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