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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 132680 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 1a1t:A
    (-1.00)    		 BS01 >1a1t:B
    ggacuagcggaggcuagucc
<<<<<<<<....>>>>>>>>
    		 N/A N/A Q75677 9430589
    2 1a1v:A
    (2.2)    		 BS01 >1a1v:B
    ccuuuuu
.......
    		 2.7.7.48
    3.4.21.98
    3.6.1.15
    3.6.4.13    		 N/A P27958 9493270
    3 1a34:A
    (1.81)    		 BS01 >1a34:B (identical to 4ijs:E, 7m2t:P, 7m2t:Q, 7m2t:R, 7m2t:S, 7m2t:T, 7m2t:U, 7m2t:V, 7m2t:W, 7m2t:X, 7m2t:Y, 7m2t:Z, 7m2t:a, 7m2t:b, 7m2t:c, 7m2t:d, 7m2t:QQ, 7m2t:RR, 7m2t:SS, 7m2t:TT, 7m2t:UU, 7m2t:VV, 7m2t:WW, 7m2t:YY, 7m2t:ZZ, 7m2t:bb, 7m2t:cc, 7m2t:dd, 7m2t:ee, 7m2t:ff, 7m2t:gg, 7m2v:S, 7m2v:V, 7m2v:k, 7m2v:U, 7m2v:X, 7m2v:TT, 7m2v:P, 7m2v:Y, 7m2v:ff, 7m2v:zz, 7m57:P, 7m57:Q, 7m57:R, 7m57:S, 7m57:T, 7m57:U, 7m57:V, 7m57:W, 7m57:X, 7m57:Y, 7m57:Z, 7m57:a, 7m57:b, 7m57:c, 7m57:d, 7m57:QQ, 7m57:RR, 7m57:SS, 7m57:TT, 7m57:UU, 7m57:VV, 7m57:WW, 7m57:YY, 7m57:ZZ, 7m57:bb, 7m57:cc, 7m57:dd, 7m57:ee, 7m57:gg, 4nia:P, 4nia:Q, 4nia:R, 4nia:S, 4nia:T, 4nia:U, 4nia:V, 4nia:W, 4nia:X, 4nia:Y, 4nia:Z, 4nia:a, 4nia:b, 4nia:c, 4nia:d, 4oq8:B, 4oq9:P, 4oq9:Q, 4oq9:R, 4oq9:S, 4oq9:T, 4oq9:U, 4oq9:V, 4oq9:W, 4oq9:X, 4oq9:Y, 4oq9:Z, 4oq9:a, 4oq9:b, 4oq9:c, 4oq9:d, 7sp1:P, 7sp1:Q, 2vnu:B)
    aaaaaaaaaa
..........
    		 N/A GO:0019028 ... P17574 9514737
    4 1a34:A
    (1.81)    		 BS02 >1a34:C (identical to 5aor:D, 5bkl:WW, 7c45:D, 6i3p:E, 6i3p:F, 6i3p:G, 6i3p:H, 3i5x:B, 3i5y:B, 3i61:B, 3i62:B, 7m2t:e, 7m2t:f, 7m2t:g, 7m2t:h, 7m2t:i, 7m2t:j, 7m2t:k, 7m2t:l, 7m2t:m, 7m2t:n, 7m2t:o, 7m2t:p, 7m2t:q, 7m2t:r, 7m2t:s, 7m2t:hh, 7m2t:ii, 7m2t:jj, 7m2t:kk, 7m2t:ll, 7m2t:mm, 7m2t:nn, 7m2t:oo, 7m2t:pp, 7m2t:qq, 7m2t:rr, 7m2t:tt, 7m2t:uu, 7m2t:vv, 7m2v:QQ, 7m2v:h, 7m2v:ww, 7m2v:T, 7m2v:m, 7m2v:i, 7m2v:e, 7m2v:n, 7m2v:xx, 7m2v:yy, 7m50:WW, 7m57:e, 7m57:f, 7m57:g, 7m57:h, 7m57:i, 7m57:j, 7m57:k, 7m57:l, 7m57:m, 7m57:n, 7m57:o, 7m57:p, 7m57:q, 7m57:r, 7m57:s, 7m57:hh, 7m57:ii, 7m57:jj, 7m57:kk, 7m57:ll, 7m57:mm, 7m57:nn, 7m57:oo, 7m57:pp, 7m57:qq, 7m57:rr, 7m57:ss, 7m57:tt, 7m57:uu, 7m57:vv, 4nia:e, 4nia:f, 4nia:g, 4nia:h, 4nia:i, 4nia:j, 4nia:k, 4nia:l, 4nia:m, 4nia:n, 4nia:o, 4nia:p, 4nia:q, 4nia:r, 4nia:s, 6o16:C, 6o16:D, 4oq8:C, 4oq9:e, 4oq9:f, 4oq9:g, 4oq9:h, 4oq9:i, 4oq9:j, 4oq9:k, 4oq9:l, 4oq9:m, 4oq9:n, 4oq9:o, 4oq9:p, 4oq9:q, 4oq9:r, 4oq9:s, 7uj1:D, 6zww:F, 6zww:H)
    uuuuuuuuuu
..........
    		 N/A GO:0019028 ... P17574 9514737
    5 1a9n:B
    (2.38)    		 BS01 >1a9n:Q (identical to 1a9n:R)
    ccugguauugcaguaccuccaggu
<<<<<.............>>>>>.
    		 N/A N/A P08579 9716128
    6 1a9n:D
    (2.38)    		 BS01 >1a9n:R (identical to 1a9n:Q)
    ccugguauugcaguaccuccaggu
<<<<<.............>>>>>.
    		 N/A N/A P08579 9716128
    7 1aq3:A
    (2.8)    		 BS01 >1aq3:R (identical to 1aq4:R, 2b2e:R, 2b2g:R, 1zdi:R)
    augaggauuacccaug
<<<.<<....>>>>>.
    		 N/A GO:0003723 ... P03612 9469847
    8 1aq3:C
    (2.8)    		 BS01 >1aq3:S
    ugaggauuaccc
...<<....>>.
    		 N/A GO:0003723 ... P03612 9469847
    9 1aq4:A
    (3.0)    		 BS01 >1aq4:R (identical to 1aq3:R, 2b2e:R, 2b2g:R, 1zdi:R)
    augaggauuacccaug
<<<.<<....>>>>>.
    		 N/A GO:0003723 ... P03612 9469847
    10 1aq4:C
    (3.0)    		 BS01 >1aq4:S
    augaggauuaccca
.<<.<<....>>>>
    		 N/A GO:0003723 ... P03612 9469847
    11 1asy:A
    (2.9)    		 BS01 >1asy:R (identical to 1asy:S, 1asz:R, 1asz:S, 1il2:C, 3j16:L, 4v3p:S2, 4v6i:CB, 4v7e:Ae)
    uccgugauaguuuaauggucagaaugggcgcuugucgcgugccagaucgg
gguucaauuccccgucgcggagcca
<<<<<<<..<<<<........>>>>.<<<<<.......>>>>>....<<<
<<.......>>>>>>>>>>>>....
    		 6.1.1.12 N/A P04802 2047877
    12 1asy:B
    (2.9)    		 BS01 >1asy:S (identical to 1asy:R, 1asz:R, 1asz:S, 1il2:C, 3j16:L, 4v3p:S2, 4v6i:CB, 4v7e:Ae)
    uccgugauaguuuaauggucagaaugggcgcuugucgcgugccagaucgg
gguucaauuccccgucgcggagcca
<<<<<<<..<<<<........>>>>.<<<<<.......>>>>>....<<<
<<.......>>>>>>>>>>>>....
    		 6.1.1.12 N/A P04802 2047877
    13 1asz:A
    (3.0)    		 BS01 >1asz:R (identical to 1asy:R, 1asy:S, 1asz:S, 1il2:C, 3j16:L, 4v3p:S2, 4v6i:CB, 4v7e:Ae)
    uccgugauaguuuaauggucagaaugggcgcuugucgcgugccagaucgg
gguucaauuccccgucgcggagcca
<<<<<<<..<<<<........>>>>.<<<<<.......>>>>>....<<<
<<.......>>>>>>>>>>>>....
    		 6.1.1.12 N/A P04802 8313877
    14 1asz:B
    (3.0)    		 BS01 >1asz:S (identical to 1asy:R, 1asy:S, 1asz:R, 1il2:C, 3j16:L, 4v3p:S2, 4v6i:CB, 4v7e:Ae)
    uccgugauaguuuaauggucagaaugggcgcuugucgcgugccagaucgg
gguucaauuccccgucgcggagcca
<<<<<<<..<<<<........>>>>.<<<<<.......>>>>>....<<<
<<.......>>>>>>>>>>>>....
    		 6.1.1.12 N/A P04802 8313877
    15 1aud:A
    (-1.00)    		 BS01 >1aud:B
    ggcagaguccuucgggacauugcaccugcc
.<<<<.<<<......>>>.......>>>>.
    		 N/A N/A P09012 9312034
    16 1av6:A
    (2.8)    		 BS01 >1av6:B
    gaaaaa
......
    		 2.1.1.57 N/A P07617 9660928
    17 1b23:P
    (2.6)    		 BS01 >1b23:R (identical to 1u0b:A)
    ggcgcguuaacaaagcgguuauguagcggauugcaaauccgucuaguccg
guucgacuccggaacgcgccucca
<<<<<<<..<<<.........>>>.<<<<<<.....>>>>>>....<<<<
<.......>>>>>>>>>>>>....
    		 N/A GO:0000166 ... Q01698 10368282
    18 1b2m:A
    (2.0)    		 BS01 >1b2m:C (identical to 8asg:D, 1b2m:D, 1b2m:E, 5f6c:C, 6i0t:B, 5k77:v, 5k77:w, 5k77:x, 5k77:y, 5k77:z, 7va6:C, 2x1f:B, 6x1b:D, 6x1b:F)
    gu
..
    		 4.6.1.24 GO:0001411 ... P00651 10029539
    19 1b2m:A
    (2.0)    		 BS02 >1b2m:D (identical to 8asg:D, 1b2m:C, 1b2m:E, 5f6c:C, 6i0t:B, 5k77:v, 5k77:w, 5k77:x, 5k77:y, 5k77:z, 7va6:C, 2x1f:B, 6x1b:D, 6x1b:F)
    gu
..
    		 4.6.1.24 GO:0001411 ... P00651 10029539
    20 1b2m:B
    (2.0)    		 BS01 >1b2m:D (identical to 8asg:D, 1b2m:C, 1b2m:E, 5f6c:C, 6i0t:B, 5k77:v, 5k77:w, 5k77:x, 5k77:y, 5k77:z, 7va6:C, 2x1f:B, 6x1b:D, 6x1b:F)
    gu
..
    		 4.6.1.24 GO:0001411 ... P00651 10029539
    21 1b2m:B
    (2.0)    		 BS02 >1b2m:E (identical to 8asg:D, 1b2m:C, 1b2m:D, 5f6c:C, 6i0t:B, 5k77:v, 5k77:w, 5k77:x, 5k77:y, 5k77:z, 7va6:C, 2x1f:B, 6x1b:D, 6x1b:F)
    gu
..
    		 4.6.1.24 GO:0001411 ... P00651 10029539
    22 1b7f:A
    (2.6)    		 BS01 >1b7f:P (identical to 1b7f:Q)
    guuguuuuuuuu
............
    		 N/A N/A P19339 10217141
    23 1b7f:B
    (2.6)    		 BS01 >1b7f:Q (identical to 1b7f:P)
    guuguuuuuuuu
............
    		 N/A N/A P19339 10217141
    24 1bmv:2
    (3.0)    		 BS01 >1bmv:M
    ggucaaaaugc
...........
    		 N/A N/A P23009 2749253
    25 1c04:C
    (5.0)    		 BS01 >1c04:E (identical to 1hc8:C, 1hc8:D, 1qa6:C, 1qa6:D)
    gccaggauguaggcuuagaagcagccaucauuuaaagaaagcguaauagc
ucacuggu
<<<<<.<<...<<<<.......>>>>...>>........<<<......>>
>..>>>>>
    		 N/A N/A P56210 10476961
    26 1c0a:A
    (2.4)    		 BS01 >1c0a:B (identical to 5gak:B, 6hd7:B, 5jte:AX, 5ju8:AX, 5mc6:n)
    ggagcgguaguucagucgguuagaauaccugccugucacgcagggggucg
cggguucgagucccguccguuccgcca
<<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<
<<<<.......>>>>>>>>>>>>....
    		 6.1.1.12 GO:0000166 ... P21889 10562565
    27 1c9s:L
    (1.9)    		 BS01 >1c9s:W
    gaugagaugagaugagaugagaugagaugagaugagaugagaugagauga
gauga
..................................................
.....
    		 N/A GO:0003723 ... Q9X6J6 10499579
    28 1c9s:M
    (1.9)    		 BS01 >1c9s:W
    gaugagaugagaugagaugagaugagaugagaugagaugagaugagauga
gauga
..................................................
.....
    		 N/A GO:0003723 ... Q9X6J6 10499579
    29 1c9s:N
    (1.9)    		 BS01 >1c9s:W
    gaugagaugagaugagaugagaugagaugagaugagaugagaugagauga
gauga
..................................................
.....
    		 N/A GO:0003723 ... Q9X6J6 10499579
    30 1c9s:O
    (1.9)    		 BS01 >1c9s:W
    gaugagaugagaugagaugagaugagaugagaugagaugagaugagauga
gauga
..................................................
.....
    		 N/A GO:0003723 ... Q9X6J6 10499579
    31 1c9s:P
    (1.9)    		 BS01 >1c9s:W
    gaugagaugagaugagaugagaugagaugagaugagaugagaugagauga
gauga
..................................................
.....
    		 N/A GO:0003723 ... Q9X6J6 10499579
    32 1c9s:Q
    (1.9)    		 BS01 >1c9s:W
    gaugagaugagaugagaugagaugagaugagaugagaugagaugagauga
gauga
..................................................
.....
    		 N/A GO:0003723 ... Q9X6J6 10499579
    33 1c9s:R
    (1.9)    		 BS01 >1c9s:W
    gaugagaugagaugagaugagaugagaugagaugagaugagaugagauga
gauga
..................................................
.....
    		 N/A GO:0003723 ... Q9X6J6 10499579
    34 1c9s:S
    (1.9)    		 BS01 >1c9s:W
    gaugagaugagaugagaugagaugagaugagaugagaugagaugagauga
gauga
..................................................
.....
    		 N/A GO:0003723 ... Q9X6J6 10499579
    35 1c9s:T
    (1.9)    		 BS01 >1c9s:W
    gaugagaugagaugagaugagaugagaugagaugagaugagaugagauga
gauga
..................................................
.....
    		 N/A GO:0003723 ... Q9X6J6 10499579
    36 1c9s:U
    (1.9)    		 BS01 >1c9s:W
    gaugagaugagaugagaugagaugagaugagaugagaugagaugagauga
gauga
..................................................
.....
    		 N/A GO:0003723 ... Q9X6J6 10499579
    37 1c9s:V
    (1.9)    		 BS01 >1c9s:W
    gaugagaugagaugagaugagaugagaugagaugagaugagaugagauga
gauga
..................................................
.....
    		 N/A GO:0003723 ... Q9X6J6 10499579
    38 1cgm:E
    (3.4)    		 BS01 >1cgm:I (identical to 5a79:R, 5a7a:R, 2om3:R, 7p9i:D, 7p9i:E, 3pdm:R, 7q22:B, 7q23:B, 7q2q:B, 7q2r:B, 7q2s:B, 6rlp:R, 6rlp:Z, 6rlp:a, 6rlp:b, 6rlp:c, 6rlp:d, 6rlp:e, 6rlp:f, 6rlp:g, 6rlp:h, 6rlp:i, 6rlp:j, 6rlp:k, 6rlp:l, 6rlp:m, 6rlp:n, 6rlp:o, 6rlp:p, 6rlp:q, 6rlp:r, 6rlp:s, 6rlp:t, 6rlp:u, 6rlp:v, 1rmv:B, 6sae:R, 6sag:R, 2tmv:R, 4udv:R, 1vtm:R, 2xea:R)
    gaa
...
    		 N/A GO:0019028 ... P69475 8201619
    39 1cvj:A
    (2.6)    		 BS01 >1cvj:M (identical to 4b3g:G, 5bkl:Y, 5bkn:X, 5bkn:Y, 5bkn:TT, 5bkn:UU, 7dic:C, 6een:H, 4f02:B, 4f02:E, 3gib:H, 4ijs:F, 4ijs:G, 4ijs:H, 7m50:bb, 4tyy:B)
    aaaaaaaaa
.........
    		 N/A N/A P11940 10499800
    40 1cvj:A
    (2.6)    		 BS02 >1cvj:P (identical to 5bkl:P, 5bkl:S, 5bkl:UU, 5bkn:P, 1cvj:N, 1cvj:O, 1cvj:R, 1cvj:S, 1cvj:T, 4ht8:I, 4ht8:K, 4ht9:D, 2jea:C, 5jjk:G, 5jrc:E, 7m3t:P, 7m3t:Y, 7m3t:TT, 7m50:P, 7m50:V, 7m50:TT, 2po1:C, 4tyw:B, 4tz0:B, 4tz6:B, 7wnu:C)
    aaaaaaa
.......
    		 N/A N/A P11940 10499800
    41 1cvj:B
    (2.6)    		 BS01 >1cvj:N (identical to 5bkl:P, 5bkl:S, 5bkl:UU, 5bkn:P, 1cvj:O, 1cvj:P, 1cvj:R, 1cvj:S, 1cvj:T, 4ht8:I, 4ht8:K, 4ht9:D, 2jea:C, 5jjk:G, 5jrc:E, 7m3t:P, 7m3t:Y, 7m3t:TT, 7m50:P, 7m50:V, 7m50:TT, 2po1:C, 4tyw:B, 4tz0:B, 4tz6:B, 7wnu:C)
    aaaaaaa
.......
    		 N/A N/A P11940 10499800
    42 1cvj:B
    (2.6)    		 BS02 >1cvj:Q (identical to 4b3g:H, 5bkl:V, 5bkl:X, 5bkn:V, 8cx0:K, 7m3t:V, 7m50:X, 7m50:UU, 7ogk:D)
    aaaaaaaa
........
    		 N/A N/A P11940 10499800
    43 1cvj:C
    (2.6)    		 BS01 >1cvj:O (identical to 5bkl:P, 5bkl:S, 5bkl:UU, 5bkn:P, 1cvj:N, 1cvj:P, 1cvj:R, 1cvj:S, 1cvj:T, 4ht8:I, 4ht8:K, 4ht9:D, 2jea:C, 5jjk:G, 5jrc:E, 7m3t:P, 7m3t:Y, 7m3t:TT, 7m50:P, 7m50:V, 7m50:TT, 2po1:C, 4tyw:B, 4tz0:B, 4tz6:B, 7wnu:C)
    aaaaaaa
.......
    		 N/A N/A P11940 10499800
    44 1cvj:C
    (2.6)    		 BS02 >1cvj:R (identical to 5bkl:P, 5bkl:S, 5bkl:UU, 5bkn:P, 1cvj:N, 1cvj:O, 1cvj:P, 1cvj:S, 1cvj:T, 4ht8:I, 4ht8:K, 4ht9:D, 2jea:C, 5jjk:G, 5jrc:E, 7m3t:P, 7m3t:Y, 7m3t:TT, 7m50:P, 7m50:V, 7m50:TT, 2po1:C, 4tyw:B, 4tz0:B, 4tz6:B, 7wnu:C)
    aaaaaaa
.......
    		 N/A N/A P11940 10499800
    45 1cvj:D
    (2.6)    		 BS01 >1cvj:M (identical to 4b3g:G, 5bkl:Y, 5bkn:X, 5bkn:Y, 5bkn:TT, 5bkn:UU, 7dic:C, 6een:H, 4f02:B, 4f02:E, 3gib:H, 4ijs:F, 4ijs:G, 4ijs:H, 7m50:bb, 4tyy:B)
    aaaaaaaaa
.........
    		 N/A N/A P11940 10499800
    46 1cvj:D
    (2.6)    		 BS02 >1cvj:P (identical to 5bkl:P, 5bkl:S, 5bkl:UU, 5bkn:P, 1cvj:N, 1cvj:O, 1cvj:R, 1cvj:S, 1cvj:T, 4ht8:I, 4ht8:K, 4ht9:D, 2jea:C, 5jjk:G, 5jrc:E, 7m3t:P, 7m3t:Y, 7m3t:TT, 7m50:P, 7m50:V, 7m50:TT, 2po1:C, 4tyw:B, 4tz0:B, 4tz6:B, 7wnu:C)
    aaaaaaa
.......
    		 N/A N/A P11940 10499800
    47 1cvj:E
    (2.6)    		 BS01 >1cvj:N (identical to 5bkl:P, 5bkl:S, 5bkl:UU, 5bkn:P, 1cvj:O, 1cvj:P, 1cvj:R, 1cvj:S, 1cvj:T, 4ht8:I, 4ht8:K, 4ht9:D, 2jea:C, 5jjk:G, 5jrc:E, 7m3t:P, 7m3t:Y, 7m3t:TT, 7m50:P, 7m50:V, 7m50:TT, 2po1:C, 4tyw:B, 4tz0:B, 4tz6:B, 7wnu:C)
    aaaaaaa
.......
    		 N/A N/A P11940 10499800
    48 1cvj:E
    (2.6)    		 BS02 >1cvj:Q (identical to 4b3g:H, 5bkl:V, 5bkl:X, 5bkn:V, 8cx0:K, 7m3t:V, 7m50:X, 7m50:UU, 7ogk:D)
    aaaaaaaa
........
    		 N/A N/A P11940 10499800
    49 1cvj:F
    (2.6)    		 BS01 >1cvj:O (identical to 5bkl:P, 5bkl:S, 5bkl:UU, 5bkn:P, 1cvj:N, 1cvj:P, 1cvj:R, 1cvj:S, 1cvj:T, 4ht8:I, 4ht8:K, 4ht9:D, 2jea:C, 5jjk:G, 5jrc:E, 7m3t:P, 7m3t:Y, 7m3t:TT, 7m50:P, 7m50:V, 7m50:TT, 2po1:C, 4tyw:B, 4tz0:B, 4tz6:B, 7wnu:C)
    aaaaaaa
.......
    		 N/A N/A P11940 10499800
    50 1cvj:F
    (2.6)    		 BS02 >1cvj:R (identical to 5bkl:P, 5bkl:S, 5bkl:UU, 5bkn:P, 1cvj:N, 1cvj:O, 1cvj:P, 1cvj:S, 1cvj:T, 4ht8:I, 4ht8:K, 4ht9:D, 2jea:C, 5jjk:G, 5jrc:E, 7m3t:P, 7m3t:Y, 7m3t:TT, 7m50:P, 7m50:V, 7m50:TT, 2po1:C, 4tyw:B, 4tz0:B, 4tz6:B, 7wnu:C)
    aaaaaaa
.......
    		 N/A N/A P11940 10499800
    51 1cvj:G
    (2.6)    		 BS01 >1cvj:S (identical to 5bkl:P, 5bkl:S, 5bkl:UU, 5bkn:P, 1cvj:N, 1cvj:O, 1cvj:P, 1cvj:R, 1cvj:T, 4ht8:I, 4ht8:K, 4ht9:D, 2jea:C, 5jjk:G, 5jrc:E, 7m3t:P, 7m3t:Y, 7m3t:TT, 7m50:P, 7m50:V, 7m50:TT, 2po1:C, 4tyw:B, 4tz0:B, 4tz6:B, 7wnu:C)
    aaaaaaa
.......
    		 N/A N/A P11940 10499800
    52 1cvj:G
    (2.6)    		 BS02 >1cvj:T (identical to 5bkl:P, 5bkl:S, 5bkl:UU, 5bkn:P, 1cvj:N, 1cvj:O, 1cvj:P, 1cvj:R, 1cvj:S, 4ht8:I, 4ht8:K, 4ht9:D, 2jea:C, 5jjk:G, 5jrc:E, 7m3t:P, 7m3t:Y, 7m3t:TT, 7m50:P, 7m50:V, 7m50:TT, 2po1:C, 4tyw:B, 4tz0:B, 4tz6:B, 7wnu:C)
    aaaaaaa
.......
    		 N/A N/A P11940 10499800
    53 1cvj:H
    (2.6)    		 BS01 >1cvj:S (identical to 5bkl:P, 5bkl:S, 5bkl:UU, 5bkn:P, 1cvj:N, 1cvj:O, 1cvj:P, 1cvj:R, 1cvj:T, 4ht8:I, 4ht8:K, 4ht9:D, 2jea:C, 5jjk:G, 5jrc:E, 7m3t:P, 7m3t:Y, 7m3t:TT, 7m50:P, 7m50:V, 7m50:TT, 2po1:C, 4tyw:B, 4tz0:B, 4tz6:B, 7wnu:C)
    aaaaaaa
.......
    		 N/A N/A P11940 10499800
    54 1cvj:H
    (2.6)    		 BS02 >1cvj:T (identical to 5bkl:P, 5bkl:S, 5bkl:UU, 5bkn:P, 1cvj:N, 1cvj:O, 1cvj:P, 1cvj:R, 1cvj:S, 4ht8:I, 4ht8:K, 4ht9:D, 2jea:C, 5jjk:G, 5jrc:E, 7m3t:P, 7m3t:Y, 7m3t:TT, 7m50:P, 7m50:V, 7m50:TT, 2po1:C, 4tyw:B, 4tz0:B, 4tz6:B, 7wnu:C)
    aaaaaaa
.......
    		 N/A N/A P11940 10499800
    55 1cwp:A
    (3.2)    		 BS01 >1cwp:D (identical to 1cwp:F)
    auau
....
    		 N/A GO:0003723 ... P03601 7743132
    56 1cwp:B
    (3.2)    		 BS01 >1cwp:E (identical to 8gwb:M, 4nku:D, 4nku:H)
    au
..
    		 N/A GO:0003723 ... P03601 7743132
    57 1cwp:C
    (3.2)    		 BS01 >1cwp:F (identical to 1cwp:D)
    auau
....
    		 N/A GO:0003723 ... P03601 7743132
    58 1d6k:A
    (-1.00)    		 BS01 >1d6k:B
    ggaccgaugguagugucuucggaugcgagaguagguc
.<<<<...<...<<<<<<..>>>>>>.....>.>>>>
    		 N/A GO:0000027 ... P68919 10562563
    59 1d9d:A
    (2.18)    		 BS01 >1d9d:B (identical to 7du2:R, 7po6:D, 7po6:E, 6sty:C)
    auc
...
    		 2.7.7.7 N/A P00582 10588690
    60 1ddl:A
    (2.7)    		 BS01 >1ddl:D (identical to 5bkl:h, 5bkl:n, 5bkn:n, 2db3:E, 2db3:F, 2db3:G, 3g0h:E, 2g4b:B, 5jji:G, 6l5n:C, 6l5n:D, 7m2t:ss, 7m3t:kk, 7m50:m, 7m50:n, 4tu7:P, 4tu7:E, 6uv1:C, 6uv1:D, 3vak:P, 3vak:E, 2xb2:R, 4xww:D, 4xww:E, 2xzo:D)
    uuuuuuu
.......
    		 N/A N/A O89511 10966774
    61 1ddl:A
    (2.7)    		 BS02 >1ddl:E (identical to 6a4e:B, 6a4e:D, 3af6:C, 6d30:C, 3er9:D, 4ht9:E, 3ie1:G, 3iem:M, 3iem:O, 3iem:P, 6j7z:C, 5kal:Y, 5kal:Z, 7m2t:t, 7m2t:u, 7m2t:v, 7m2t:w, 7m2t:x, 7m2t:y, 7m2t:z, 7m2t:1, 7m2t:2, 7m2t:3, 7m2t:4, 7m2t:5, 7m2t:6, 7m2t:8, 7m2t:ww, 7m2t:xx, 7m2t:yy, 7m2t:zz, 7m57:t, 7m57:u, 7m57:v, 7m57:w, 7m57:x, 7m57:y, 7m57:z, 7m57:1, 7m57:2, 7m57:3, 7m57:4, 7m57:5, 7m57:6, 7m57:8, 7m57:ww, 7m57:xx, 7m57:yy, 7m57:zz, 5new:C, 4nia:t, 4nia:u, 4nia:v, 4nia:w, 4nia:x, 4nia:y, 4nia:z, 4nia:1, 4nia:2, 4nia:3, 4nia:4, 4nia:5, 4nia:6, 4nia:7, 4nia:8, 4oq8:D, 4oq9:t, 4oq9:u, 4oq9:v, 4oq9:w, 4oq9:x, 4oq9:y, 4oq9:z, 4oq9:1, 4oq9:2, 4oq9:3, 4oq9:4, 4oq9:5, 4oq9:6, 4oq9:7, 4oq9:8, 2vrt:E, 2vrt:F)
    uu
..
    		 N/A N/A O89511 10966774
    62 1ddl:B
    (2.7)    		 BS01 >1ddl:D (identical to 5bkl:h, 5bkl:n, 5bkn:n, 2db3:E, 2db3:F, 2db3:G, 3g0h:E, 2g4b:B, 5jji:G, 6l5n:C, 6l5n:D, 7m2t:ss, 7m3t:kk, 7m50:m, 7m50:n, 4tu7:P, 4tu7:E, 6uv1:C, 6uv1:D, 3vak:P, 3vak:E, 2xb2:R, 4xww:D, 4xww:E, 2xzo:D)
    uuuuuuu
.......
    		 N/A N/A O89511 10966774
    63 1ddl:C
    (2.7)    		 BS01 >1ddl:D (identical to 5bkl:h, 5bkl:n, 5bkn:n, 2db3:E, 2db3:F, 2db3:G, 3g0h:E, 2g4b:B, 5jji:G, 6l5n:C, 6l5n:D, 7m2t:ss, 7m3t:kk, 7m50:m, 7m50:n, 4tu7:P, 4tu7:E, 6uv1:C, 6uv1:D, 3vak:P, 3vak:E, 2xb2:R, 4xww:D, 4xww:E, 2xzo:D)
    uuuuuuu
.......
    		 N/A N/A O89511 10966774
    64 1dfu:P
    (1.8)    		 BS01 >1dfu:M
    cccaugcgagaguagggac
...................
    		 N/A GO:0000027 ... P68919 10696113
    65 1dfu:P
    (1.8)    		 BS02 >1dfu:N
    ugccgaugguagugugggg
...................
    		 N/A GO:0000027 ... P68919 10696113
    66 1di2:A
    (1.9)    		 BS01 >1di2:C (identical to 1di2:D, 1di2:E, 1rc7:B, 1rc7:C, 1rc7:D, 1rc7:E)
    ggcgcgcgcc
..........
    		 N/A N/A Q91836 9857205
    67 1di2:A
    (1.9)    		 BS02 >1di2:D (identical to 1di2:C, 1di2:E, 1rc7:B, 1rc7:C, 1rc7:D, 1rc7:E)
    ggcgcgcgcc
..........
    		 N/A N/A Q91836 9857205
    68 1di2:A
    (1.9)    		 BS03 >1di2:E (identical to 1di2:C, 1di2:D, 1rc7:B, 1rc7:C, 1rc7:D, 1rc7:E)
    ggcgcgcgcc
..........
    		 N/A N/A Q91836 9857205
    69 1di2:B
    (1.9)    		 BS01 >1di2:C (identical to 1di2:D, 1di2:E, 1rc7:B, 1rc7:C, 1rc7:D, 1rc7:E)
    ggcgcgcgcc
..........
    		 N/A N/A Q91836 9857205
    70 1di2:B
    (1.9)    		 BS02 >1di2:D (identical to 1di2:C, 1di2:E, 1rc7:B, 1rc7:C, 1rc7:D, 1rc7:E)
    ggcgcgcgcc
..........
    		 N/A N/A Q91836 9857205
    71 1di2:B
    (1.9)    		 BS03 >1di2:E (identical to 1di2:C, 1di2:D, 1rc7:B, 1rc7:C, 1rc7:D, 1rc7:E)
    ggcgcgcgcc
..........
    		 N/A N/A Q91836 9857205
    72 1dk1:A
    (2.8)    		 BS01 >1dk1:B (identical to 1f7y:B, 1kuq:B)
    gggcggccuucgggcuagacggugggagaggcuucggcugguccacccgu
gacgcuc
<<<<.<<<....>>>...<<<<<<<<...<<<....>>>..>>>>>.>>>
...>>>>
    		 N/A GO:0003723 ... P80378 10742169
    73 1drz:A
    (2.3)    		 BS01 >1drz:B (identical to 4pr6:B)
    ggccggcauggucccagccuccucgcuggcgccggcugggcaacaccauu
gcacuccgguggcgaaugggac
<<<<<<<...((((((<<<.((.....>>>>>>>>>>))....<<<<...
.......>>>>.....))))))
    		 N/A N/A P09012 9783582
    74 1dul:A
    (1.8)    		 BS01 >1dul:B (identical to 1hq1:B, 3lqx:B)
    ggcucuguuuaccaggucagguccgaaaggaagcagccaaggcagagcc
<<<<<<<<<<....<<<..<.<<<....>>>..>.>>>.>>>>>>>>>>
    		 N/A N/A P0AGD7 10678824
    75 1dz5:A
    (-1.00)    		 BS01 >1dz5:C (identical to 1dz5:D)
    gagacauugcacccggagucuc
......................
    		 N/A N/A P09012 10742179
    76 1dz5:A
    (-1.00)    		 BS02 >1dz5:D (identical to 1dz5:C)
    gagacauugcacccggagucuc
......................
    		 N/A N/A P09012 10742179
    77 1dz5:B
    (-1.00)    		 BS01 >1dz5:C (identical to 1dz5:D)
    gagacauugcacccggagucuc
......................
    		 N/A N/A P09012 10742179
    78 1dz5:B
    (-1.00)    		 BS02 >1dz5:D (identical to 1dz5:C)
    gagacauugcacccggagucuc
......................
    		 N/A N/A P09012 10742179
    79 1e7k:A
    (2.9)    		 BS01 >1e7k:C (identical to 1e7k:D)
    gccaaugaggccgaggc
<<<.....<<>>..>>>
    		 N/A GO:0000398 ... P55769 11163207
    80 1e7k:B
    (2.9)    		 BS01 >1e7k:D (identical to 1e7k:C)
    gccaaugaggccgaggc
<<<.....<<>>..>>>
    		 N/A GO:0000398 ... P55769 11163207
    81 1e8o:A
    (3.2)    		 BS01 >1e8o:E
    gggccgggcgcgguggcgcgcgccuguagucccagcuacucgggaggcuc
<<<<<<<<<<<<..(((.>>>>>>>....<<<<.)))....>>>>>>>>>
    		 N/A GO:0003723 ... P49458 11089964
    82 1e8o:B
    (3.2)    		 BS01 >1e8o:E
    gggccgggcgcgguggcgcgcgccuguagucccagcuacucgggaggcuc
<<<<<<<<<<<<..(((.>>>>>>>....<<<<.)))....>>>>>>>>>
    		 N/A N/A P37108 11089964
    83 1e8o:C
    (3.2)    		 BS01 >1e8o:E
    gggccgggcgcgguggcgcgcgccuguagucccagcuacucgggaggcuc
<<<<<<<<<<<<..(((.>>>>>>>....<<<<.)))....>>>>>>>>>
    		 N/A GO:0003723 ... P49458 11089964
    84 1e8o:D
    (3.2)    		 BS01 >1e8o:E
    gggccgggcgcgguggcgcgcgccuguagucccagcuacucgggaggcuc
<<<<<<<<<<<<..(((.>>>>>>>....<<<<.)))....>>>>>>>>>
    		 N/A N/A P37108 11089964
    85 1ec6:A
    (2.4)    		 BS01 >1ec6:D (identical to 1ec6:C)
    gaggaccuagaucaccccuc
<<<<............>>>>
    		 N/A N/A Q9UNW9 10676814
    86 1ec6:B
    (2.4)    		 BS01 >1ec6:C (identical to 1ec6:D)
    gaggaccuagaucaccccuc
<<<<............>>>>
    		 N/A N/A Q9UNW9 10676814
    87 1efw:A
    (3.0)    		 BS01 >1efw:C (identical to 1efw:D)
    ggagcgguaguucagucgguuagaauaccugccugucacgcagggggucg
cggguucgagucccguccguucc
<<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<
<<<<.......>>>>>>>>>>>>
    		 6.1.1.12 GO:0000166 ... P36419 10843857
    88 1efw:B
    (3.0)    		 BS01 >1efw:D (identical to 1efw:C)
    ggagcgguaguucagucgguuagaauaccugccugucacgcagggggucg
cggguucgagucccguccguucc
<<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<
<<<<.......>>>>>>>>>>>>
    		 6.1.1.12 GO:0000166 ... P36419 10843857
    89 1eiy:A
    (3.3)    		 BS01 >1eiy:C (identical to 2iy5:T)
    gccgagguagcucaguugguagagcaugcgacugaaaaucgcaguguccg
cgguucgauuccgcgccucggcacca
<<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<
<<<.......>>>>>>>>>>>>....
    		 6.1.1.20 GO:0000166 ... Q5SGX2 9016717
    90 1eiy:B
    (3.3)    		 BS01 >1eiy:C (identical to 2iy5:T)
    gccgagguagcucaguugguagagcaugcgacugaaaaucgcaguguccg
cgguucgauuccgcgccucggcacca
<<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<
<<<.......>>>>>>>>>>>>....
    		 6.1.1.20 GO:0000049 ... Q5SGX1 9016717
    91 1ekz:A
    (-1.00)    		 BS01 >1ekz:B
    ggacagcugucccuucggggacagcugucc
<<<<<<<<<<<<<....>>>>>>>>>>>>>
    		 N/A N/A P25159 10698941
    92 1eqq:A
    (3.2)    		 BS01 >1eqq:M (identical to 7dkg:C, 6e4p:J, 6e4p:K, 2f55:E, 6gc5:F, 6gc5:H, 6i2n:U, 1i5l:U, 1i5l:Y, 3iem:J, 3iem:K, 5ip2:F, 5ip2:D, 5mq0:3, 5sze:C, 2voo:C, 2voo:D, 6vyt:Y, 6vyu:Y, 6vyw:Y, 6vyx:Y, 6vyy:Y, 6vyz:Y, 6vz2:Y, 6vz3:Y, 6vz5:Y, 6vz7:Y)
    uuu
...
    		 N/A GO:0000725 ... P0AGE0 10731701
    93 1eqq:B
    (3.2)    		 BS01 >1eqq:M (identical to 7dkg:C, 6e4p:J, 6e4p:K, 2f55:E, 6gc5:F, 6gc5:H, 6i2n:U, 1i5l:U, 1i5l:Y, 3iem:J, 3iem:K, 5ip2:F, 5ip2:D, 5mq0:3, 5sze:C, 2voo:C, 2voo:D, 6vyt:Y, 6vyu:Y, 6vyw:Y, 6vyx:Y, 6vyy:Y, 6vyz:Y, 6vz2:Y, 6vz3:Y, 6vz5:Y, 6vz7:Y)
    uuu
...
    		 N/A GO:0000725 ... P0AGE0 10731701
    94 1eqq:B
    (3.2)    		 BS02 >1eqq:N (identical to 4am3:D, 4am3:I, 7oyr:C, 3p6y:W, 4pei:R, 3pf5:S)
    u
.
    		 N/A GO:0000725 ... P0AGE0 10731701
    95 1euq:A
    (3.1)    		 BS01 >1euq:B
    gggguaucgccaagcgguaaggcaccggauucugauuccggcagcgaggu
ucgaauccucguaccccagcca
<<<<<<..<<<.........>>>.<<<<<.......>>>>>...<<<<<.
......>>>>>>>>>>>.....
    		 6.1.1.18 GO:0000166 ... P00962 10860750
    96 1euy:A
    (2.6)    		 BS01 >1euy:B
    gggguaucgccaagcgguaaggcaccggauucugauuccggcaagcgagg
uucgaauccucguaccccagcca
<<<<<<..<<<.........>>>.<<<<<.......>>>>>....<<<<<
.......>>>>>>>>>>>.....
    		 6.1.1.18 GO:0000166 ... P00962 10860750
    97 1exd:A
    (2.7)    		 BS01 >1exd:B
    gggguaucgccaagcgguaaggcaccggauucugauuccggaggucgagg
uucgaauccucguaccccagcca
<<<<<<..<<<.........>>>.<<<<<.......>>>>>....<<<<<
.......>>>>>>>>>>>.....
    		 6.1.1.18 GO:0000166 ... P00962 10881199 PDBbind: Kd=7.1nM
    98 1f6u:A
    (-1.00)    		 BS01 >1f6u:B
    ggcgacuggugaguacgcc
<<<<<<<....>>>.>>>>
    		 2.7.7.49
    2.7.7.7
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 N/A P35963 10926523 PDBbind: Kd=110nM
    99 1f7u:A
    (2.2)    		 BS01 >1f7u:B (identical to 6i7o:n, 6q8y:n, 7r81:t1, 7r81:u1, 6snt:6, 6sv4:n, 6t4q:6, 6t7i:6)
    uuccucguggcccaauggucacggcgucuggcuacgaaccagaagauucc
agguucaaguccuggcggggaagcca
<<<<<<<..<<<..........>>>.<<<<<.......>>>>>.....<<
<<<.......>>>>>>>>>>>>....
    		 6.1.1.19 GO:0000166 ... Q05506 11060012
    100 1f7v:A
    (2.9)    		 BS01 >1f7v:B
    uuccucguggcccaauggucacggcgucuggcuacgaaccagaagauucc
agguucaaguccuggcggggaag
<<<<<<<..<<<..........>>>.<<<<<.......>>>>>.....<<
<<<.......>>>>>>>>>>>>.
    		 6.1.1.19 GO:0000166 ... Q05506 11060012
    Reference:
    Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218