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BioLiP Library
Download all results in tab-seperated text for 249 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 5zji:N (3.3) BS01 CLA ? GO:0009507 ... B6TXS5 29880686
    202 5zji:N (3.3) BS02 CLA ? GO:0009507 ... B6TXS5 29880686
    203 5zji:O (3.3) BS01 CLA ? GO:0016020 ... B6SQZ7 29880686
    204 5zji:O (3.3) BS02 CLA ? GO:0016020 ... B6SQZ7 29880686
    205 5zji:O (3.3) BS03 CLA ? GO:0016020 ... B6SQZ7 29880686
    206 5zji:O (3.3) BS04 CLA ? GO:0016020 ... B6SQZ7 29880686
    207 5zji:X (3.3) BS01 CHL ? GO:0009765 ... P12329 29880686
    208 5zji:X (3.3) BS02 CLA ? GO:0009765 ... P12329 29880686
    209 5zji:X (3.3) BS03 CLA ? GO:0009765 ... P12329 29880686
    210 5zji:X (3.3) BS04 CHL ? GO:0009765 ... P12329 29880686
    211 5zji:X (3.3) BS05 CHL ? GO:0009765 ... P12329 29880686
    212 5zji:X (3.3) BS06 CHL ? GO:0009765 ... P12329 29880686
    213 5zji:X (3.3) BS07 CHL ? GO:0009765 ... P12329 29880686
    214 5zji:X (3.3) BS08 CHL ? GO:0009765 ... P12329 29880686
    215 5zji:X (3.3) BS09 CLA ? GO:0009765 ... P12329 29880686
    216 5zji:X (3.3) BS10 CLA ? GO:0009765 ... P12329 29880686
    217 5zji:X (3.3) BS11 CLA ? GO:0009765 ... P12329 29880686
    218 5zji:X (3.3) BS12 CLA ? GO:0009765 ... P12329 29880686
    219 5zji:X (3.3) BS13 CLA ? GO:0009765 ... P12329 29880686
    220 5zji:Y (3.3) BS01 CHL ? GO:0009765 ... B6SZT9 29880686
    221 5zji:Y (3.3) BS02 CLA ? GO:0009765 ... B6SZT9 29880686
    222 5zji:Y (3.3) BS03 CLA ? GO:0009765 ... B6SZT9 29880686
    223 5zji:Y (3.3) BS04 CLA ? GO:0009765 ... B6SZT9 29880686
    224 5zji:Y (3.3) BS05 CHL ? GO:0009765 ... B6SZT9 29880686
    225 5zji:Y (3.3) BS06 CHL ? GO:0009765 ... B6SZT9 29880686
    226 5zji:Y (3.3) BS07 CHL ? GO:0009765 ... B6SZT9 29880686
    227 5zji:Y (3.3) BS08 CHL ? GO:0009765 ... B6SZT9 29880686
    228 5zji:Y (3.3) BS09 CHL ? GO:0009765 ... B6SZT9 29880686
    229 5zji:Y (3.3) BS10 CLA ? GO:0009765 ... B6SZT9 29880686
    230 5zji:Y (3.3) BS11 CLA ? GO:0009765 ... B6SZT9 29880686
    231 5zji:Y (3.3) BS12 CLA ? GO:0009765 ... B6SZT9 29880686
    232 5zji:Y (3.3) BS13 CLA ? GO:0009765 ... B6SZT9 29880686
    233 5zji:Y (3.3) BS14 CLA ? GO:0009765 ... B6SZT9 29880686
    234 5zji:Y (3.3) BS15 CHL ? GO:0009765 ... B6SZT9 29880686
    235 5zji:Z (3.3) BS01 CHL ? GO:0009765 ... P12329 29880686
    236 5zji:Z (3.3) BS02 CHL ? GO:0009765 ... P12329 29880686
    237 5zji:Z (3.3) BS03 CLA ? GO:0009765 ... P12329 29880686
    238 5zji:Z (3.3) BS04 CLA ? GO:0009765 ... P12329 29880686
    239 5zji:Z (3.3) BS05 CLA ? GO:0009765 ... P12329 29880686
    240 5zji:Z (3.3) BS06 CHL ? GO:0009765 ... P12329 29880686
    241 5zji:Z (3.3) BS07 CHL ? GO:0009765 ... P12329 29880686
    242 5zji:Z (3.3) BS08 CHL ? GO:0009765 ... P12329 29880686
    243 5zji:Z (3.3) BS09 CHL ? GO:0009765 ... P12329 29880686
    244 5zji:Z (3.3) BS10 CHL ? GO:0009765 ... P12329 29880686
    245 5zji:Z (3.3) BS11 CLA ? GO:0009765 ... P12329 29880686
    246 5zji:Z (3.3) BS12 CLA ? GO:0009765 ... P12329 29880686
    247 5zji:Z (3.3) BS13 CLA ? GO:0009765 ... P12329 29880686
    248 5zji:Z (3.3) BS14 CLA ? GO:0009765 ... P12329 29880686
    249 5zji:Z (3.3) BS15 CLA ? GO:0009765 ... P12329 29880686
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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