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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
UNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDT
PKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ

The query sequence (length=114) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7kri:A 127 113 0.9912 0.8898 1.0000 1.08e-81 7kri:B, 7kri:C, 7n3k:A, 7n3k:B, 7n3k:C, 7n3k:D, 7n3k:E, 7n3k:F, 7n3k:G, 7n3k:H
2 7mjp:A 366 25 0.0965 0.0301 0.4400 3.3 7mit:A, 7mit:B, 7mit:C, 7mit:D, 7mjo:A, 7mjo:B, 7mjo:C, 7mjo:D, 7mjp:B, 7mjp:D, 7mjq:A, 7mjq:B, 7mjq:C
3 8id2:A 95 22 0.0965 0.1158 0.5000 5.3 8id2:B, 7p0v:A
4 1kj3:H 279 38 0.1140 0.0466 0.3421 8.9 1bqh:A, 1bqh:D, 3c8k:A, 2ckb:H, 2ckb:I, 2clv:A, 2clv:H, 2clz:A, 2clz:H, 3cvh:A, 3cvh:M, 1fo0:H, 2fo4:A, 1fzj:A, 1fzk:A, 1fzm:A, 1fzo:A, 1g6r:H, 1g6r:I, 1g7p:A, 1g7q:A, 6gb6:A, 6gb6:D, 4hkj:A, 4hkj:E, 4hkj:I, 4hkj:M, 4hs3:A, 7ji2:A, 7ji2:D, 6jq2:A, 6jq3:A, 1kbg:H, 1kj2:H, 1kj2:I, 1kj3:I, 1kpu:A, 1kpv:A, 1leg:A, 1lek:A, 1lk2:A, 2mha:A, 2mha:C, 1mwa:H, 1mwa:I, 1n59:A, 1n59:C, 1nam:H, 1nan:H, 1nan:L, 2ol3:H, 1osz:A, 1p1z:A, 1p4l:A, 3p4m:D, 3p4m:A, 3p4n:D, 3p4n:A, 3p4o:D, 3p4o:A, 3p9l:D, 3p9l:A, 3p9m:D, 3p9m:A, 3pab:D, 3pab:A, 4pg9:A, 4pgb:A, 4pgb:D, 4pgc:A, 4pgc:D, 4pgd:A, 4pge:A, 4pv8:A, 4pv8:C, 4pv9:A, 4pv9:C, 3rgv:C, 1rjy:A, 1rjy:D, 1rjz:A, 1rjz:D, 1rk0:A, 1rk1:A, 3rol:A, 3rol:C, 3roo:A, 3roo:C, 1s7q:A, 1s7r:A, 1s7r:D, 1s7s:A, 1s7t:A, 1s7t:D, 1t0m:A, 1t0m:D, 1t0n:A, 1t0n:D, 3tid:A, 3tie:A, 3tie:D, 1vac:A, 1vad:A, 2vaa:A, 2vab:A, 1wbz:A, 1wbz:C, 7wcy:A, 7wcy:D, 6wl2:A, 6wl2:D, 6wl2:G, 6wl3:A, 6wl3:D, 6wl3:G, 6wl4:A, 6wl4:D, 6wl4:G, 2zsv:A, 2zsv:C, 2zsw:A, 2zsw:E, 2zsw:C, 2zsw:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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