C-QUARK download
C-QUARK Suite is a package of standalone programs for
contact-assisted protein structure prediction. The user manual is at
README.txt. Please report bugs and
questions at Zhang Lab Service System
Discussion Board. The C-QUARK Suite is free for academic
researchers.
C-QUARK library download:
- uniclust30_2017_04_hhsuite.tar.gz: Uniclust30 library (for C-QUARK, DeepMSA).
- uniref90.fasta.gz: UniRef90 library (for C-QUARK, DeepMSA).
- metaclust_2017_05.fasta.gz: Metaclust library (for C-QUARK, DeepMSA).
- abs (~9000MB):
fragments library for C-QUARK.
- CE (~7500MB): CEthreader library (for C-QUARK, LOMETS2 and CEthreader).
- PDB (~1482MB):
non-redundant protein structures from PDB (for C-QUARK, LOMETS2, MUSTER, CEthreader and SEGMER).
- MTX (~526MB):
Sequence profiles from PSI-BLAST search (for C-QUARK, LOMETS2, MUSTER and SEGMER).
- DEP (~315MB):
Depth-dependent structure profiles of templates (for C-QUARK, LOMETS2, MUSTER and SEGMER).
- SIG (~334MB):
Residue environmental profiles of templates (for C-QUARK, LOMETS2).
- CNT (~133MB):
Side-chain center contacts of templates (for C-QUARK, LOMETS2).
- dotProfile (~173MB):
Sequence profiles from PSI-BLAST search (for C-QUARK, LOMETS2).
- stride (~3MB):
Seven state secondary structure assignment (for C-QUARK, LOMETS2).
- summary1 (~66MB):
Sequence, secondary structure, solvent accessibilty, phi/psi angles (for C-QUARK, LOMETS2, MUSTER and SEGMER).
- summary2 (~185MB):
Training data for phi/psi prediction and contact prediction by SVM (for C-QUARK, LOMETS2, MUSTER and SEGMER).
- Bfactor (~155MB):
B-factor values of templates (for B-factor profile prediction).
Instructions on how to configure the three DeepMSA libraries are available at
README.txt
C-QUARK Suite download:
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For academic users, please click
C-QUARK
to download the C-QUARK Suite.
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If you need C-QUARK Suite for a commercial use, please contact us through yangzhanglab
umich.edu.
umich.edu
| (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218