CEthreader results

CEthreader results for CEC509

[Click result.zip to download all results on this page]

Input Sequence in FASTA format

>CEC509 (89 residues)
CVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRLSAARRAGTSCANCQT
TTTTLWRRNANGDPVCNACGLYYKLHNIN

Predicted Secondary Structure

Sequence	20 40 60 80 \| \| \| \| CVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRLSAARRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNIN
Prediction	CCCCCCCCCCCSSSCCCCCSSSCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCSSCCCCCCCCCCSSSCCCCCSSCHHHCCSSHHCCCC
Conf.Score	99999978985788999997656656768885999999999887774556999555999999987687999996646764565447999
	H:Helix; S:Strand; C:Coil

Contact Prediction used to guide CEthreader

Download contact map.

Top 20 Templates Identified by CEthreader

Rank

PDB
Hit

ID1

ID2

Cov

Norm.
Zscore

Download
Alignment

                  20                  40                  60                  80

                   |                   |                   |                   |

Sec.Str.
Seq

CCCCCCCCCCCSSSCCCCCSSSCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCSSCCCCCCCCCCSSSCCCCCSSCHHHCCSSHHCCCC
CVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRLSAARRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNIN

4hc7A

1.00

1.41

CEthreader_1

CVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRLSAARRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNIN

5yugA

0.21

0.18

0.84

1.20

CEthreader_2

NASCGTTSTVEWKKGGLLADLCYRCGSAYESSLFCEQFH-------KDQSGWRECYLCSKRLHCTIELMDYGGVGCSTCACC-------

5z28A

0.21

0.18

0.87

1.16

CEthreader_3

CMNGAASTSGEWKKGGDLASLCDKCGCAYEQSIFCEVFH-------AKESGWRECNSCDKRLHCMMELLENGGVTCISCAKKSG-----

3s6lA

0.08

1.00

1.00

CEthreader_4

SGTDATALGQASNASGNHSTALGQASSASGSGSTAQGAGAPGDGASAFGQGALASGTDSTALGAHSTAAAPNSAAIGANSVASAPNSVS

1p9hA

0.07

1.00

0.98

CEthreader_5

AKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAASTAQKDGVAIGARASTSDTGVAVGFNSKADAKNSVAIGHSSHVAANHGYS

5ercA

0.11

0.99

0.96

CEthreader_6

CALCPNK-GGAFKQTDDGRWAHVVCALWVCFANTVFLEPIDSIEHIPPARWKLTCYICKQRGSGACIQCHKYTAFHVTCAQQAGLYMKM

7d86A

0.14

0.13

0.99

0.96

CEthreader_7

CELCPSQDGI-FKETDAGRWVHVVCALYVAFGDIDKLRPVTLTEMNYSKYGAKECSLCFARTGVCISCDAGRSFFHVTCAQREGLLSEA

2xqhA

0.10

1.00

0.91

CEthreader_8

ATEKASTAVGSWAAADGKQSTALGVGTYAYANASSVAFVDNTATYGTAAGNRAKVATEGTALGAKATVTNKNSVALGANSVTTRDNEVY

4ap4A

0.18

1.00

0.91

CEthreader_9

CPICMDGNGRLIVSTECGHVFCSQCLRDSLKNANTCPTNHKRYHPIYIGSGTVSCPICMDGYSRLIVSTECGHVFCSQCLRDSLKNANT

5dkaA

0.18

0.17

0.92

0.89

CEthreader_10

CAVCLEVLH-QPVRTRCGHVFCRSCIATSLKNNKWTEGVPATDVAKRMKSEYKNCAECDTLVCLSEMR--AHIRTCQKYIDKYGP----

7o23A3

0.04

0.03

0.96

0.88

CEthreader_11

ATGTDSAASGTNSTANGTNSTASGDNSTASGTNASATGENSTATGTASTASGSNSTSTASGAGATATGENAAATGAGATATGNNA----

2xqhA1

0.09

1.00

0.86

CEthreader_12

ATEKASTAVGSWAAADGKQSTALGVGTYAYANASSVAFVDNTATYGTAAGNRAKVDEGTALGAKATVTNKNSVALGANSVTTRDNEVYI

2xzlA1

0.14

0.13

0.98

0.84

CEthreader_13

CAYCGDSAKCVIKCNSCKKWFCNTHIVNHLVLSHHNVVSLHPD--SDLGDTVLECYNCGRKNVFLLGFVSVVLLCRIPCAQTKWDTDQW

2wjvA1

0.14

0.13

0.98

0.84

CEthreader_14

CSYCGIHDACVVYCNTSKKWFCNGHIVNHLVRAKCKEVTLHKD--GPLGETVLECYNCGCRNVFLLGFIPAVVLLCRQPCASQSSLKWD

7o23A1

0.07

0.06

0.84

CEthreader_15

SGSNSTANGANSTASGDNSTASGTNASATGENSTATGTD-----STASGSNSTANGTNSTASGNNSTASGTNASATGENS---------

2dfyX

0.12

1.00

0.84

CEthreader_16

CAGCGGKIADRFLLYAMDSYWHSRCLKQAQLGDIGTSSYTKSGMILCRNGNSGACSACGQSIPASLVMRAQGNVYHLKCFTCSTCRNRL

3pr7A

0.08

1.00

0.84

CEthreader_17

IENSTVGGGGYNQAKGRNSTVAGGYNNEATGTDSTIAGNQATGKGSFAAGIDNKANADNAVALGNKNTIEGENSVAIGSNNTVKKGQQN

2xzlA

0.14

0.13

0.98

0.84

CEthreader_18

CAYCGDSAKCVIKCNSCKKWFCNTHIVNHLVLSHHNVVSLHPD--SDLGDTVLECYNCGRKNVFLLGFVSVVLLCRIPCAQTKWDTDQW

2miuA

0.11

0.10

0.96

0.84

CEthreader_19

CHHCNESLFGKKYILREESPYCVVCFETLFGKPIGCDCKDLSYKDRHWHEACFHCSQCRNSLVDKPFAAKEDQLLCTDCYSNEYS----

2xjyA

0.10

1.00

0.84

CEthreader_20

CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRRRDYLRLFGQDGLCASCDKRIRAYMTMRVKDKVYHLECFKCAACQKHF

(a)	ID1 is the number of template residues identical to query divided by number of aligned residues.
(b)	ID2 is the number of template residues identical to query divided by query sequence length.
(c)	Cov is equal the number of aligned template residues divided by query sequence length.
(d)	Norm. Zscore is the normalized Z-score of the threading alignments. A normalized Z-score ≥1 means a good alignment.
(e)	Sec.Str. is predicted secondary structure, with H, S and C representing helix, strand, and coil, respectively.

Top Final Models

CEthreader uses MODELLER to reconstruct full length models from top 5 templates. By dragging your mouse on the images, you rotate and zoom the structure.

Download Model 1

Download Model 2

Download Model 3

Download Model 4

Download Model 5

[Click result.zip to download all results on this page]

References:
1.	W Zheng, Q Wuyun, Y Li, SM Mortuza, C Zhang, R Pearce, J Ruan, Y Zhang. Detecting distant-homology protein structures by aligning deep neural-network based contact maps. PLoS Comput Biol (2019).