Example output of CR-I-TASSER

[Download result.tar.bz2 for all fitting results]

Sequence	20                  40                  60                  80                    |                   |                   |                   | GPADCCRMKECCTDRVNECLQRYSGREDKFVSFCYQEATVTCGSFNEIVGCCYGYQMCMIRVVKPNSLSGAHEACKTVSCGNPCA
Prediction	CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHSSSCCCSSSCCCHHHHHHHHHCHSSSSSSSSCCCCCCCHHHHCCCCCCCCCCC
Confidence	9424564568888889999998458741254202001224226524444333130257999846775432577513244799799
	H:Helix; S:Strand; C:Coil

Sequence	20                  40                  60                  80                    |                   |                   |                   | GPADCCRMKECCTDRVNECLQRYSGREDKFVSFCYQEATVTCGSFNEIVGCCYGYQMCMIRVVKPNSLSGAHEACKTVSCGNPCA
Prediction	8555224246114630450165264464410410254032413424400000342330102014465263335204426255538
	Values range from 0 (buried residue) to 8 (highly exposed residue)

Rank	PDB hit	ID1	ID2	Cov	Norm. Zscore	Download alignment		20                  40                  60                  80                    |                   |                   |                   |
							SS Seq	CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHSSSCCCSSSCCCHHHHHHHHHCHSSSSSSSSCCCCCCCHHHHCCCCCCCCCCC GPADCCRMKECCTDRVNECLQRYSGREDKFVSFCYQEATVTCGSFNEIVGCCYGYQMCMIRVVKPNSLSGAHEACKTVSCGNPCA
0_1	4ldqA2	0.06	0.06	2.59	0.74	SPARKS-K		LEKDLRDNRSIGDLGARHLLERVAPSGGKVTVLTHNTGALATAGYGTALGVIRSLRLEHAFCTETRPYNQGARLTAFELVYEQIP
0_2	2iu5A2	0.16	0.12	3.91	0.47	FFAS-3D		----FLIQWENLLDKVIFDQEKYHWSDLEKSFICRYNAAAIC-------------AITRESIIRGNSLEKLYSQIVNLL------
0_3	1ausS	0.16	0.04	1.18	0.21	HHpred		---------AQVLNELEECKKEYPNAFI---------------------------------------------------------
0_4	4bitA1	0.23	0.21	6.66	0.77	MUSTER		PGADC----EVCKEFLNRFYKSLIDREKELISFC-LDTKGKENRLCYYLGATKDAATKILSVTRPMSVHPAMKICEKLKKLDSCE
0_5	6ek9A	0.22	0.19	5.93	0.57	CNFpred		--TKCIRTDMDCADATAAVLSRHTGYDANVTRAVLQACATVCAAC---GDECARHAGMHE------HCRVCAEACR--SCEQACQ
0_6	3i2tA3	0.21	0.05	1.49	0.27	HHsearch-2		------------------------------------------------------------------SKLTCSPQCAGGRCYGPKP
0_7	2rjiA	0.15	0.13	4.36	0.79	Neff-PPAS		--------DSTTKELIKKLAEINKCENEISAKYCDHMILKTCTKEKTRNLCCAVSDYCMSYF---TYDSEEYYDCTKREFDDPCF
0_8	2fi2A1	0.18	0.09	3.06	0.29	HHsearch		------------GSDPGP-----EAARLRFRCFHYEEATGPQEALAQLRELCRQW-------LRPEVR-----------------
0_9	2ddia	0.22	0.16	5.21	0.67	SP3		---------EAEAEFTDACVLAVQGPRGWEPRWAYSPLLQQCHPF--VYGGCEG---------NGNSRESCEDACPVVDHHHHHH
0_10	5g2fA	0.07	0.07	2.85	0.36	PROSPECTOR2		A---NLAAGQSYVRNVALALEAQRDPSTGALPTHLTDCLSGFGQRPKTVTACALDYVIEASLDGAALKKVVYKSSDGTLTSLP--
(a) ID1 is the number of template residues identical to query divided by number of aligned residues. (b) ID2 is the number of template residues identical to query divided by query sequence length. (c) Cov is equal the number of aligned template residues divided by query sequence length. (d) Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. (e) Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading0_[1-10].pdb.gz). (f) Template residues identical to query sequence are highlighted in color.

Rank	PDB hit	ID1	ID2	Cov	Norm. Zscore	Download alignment		20                  40                  60                  80                    |                   |                   |                   |
							SS Seq	CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHSSSCCCSSSCCCHHHHHHHHHCHSSSSSSSSCCCCCCCHHHHCCCCCCCCCCC GPADCCRMKECCTDRVNECLQRYSGREDKFVSFCYQEATVTCGSFNEIVGCCYGYQMCMIRVVKPNSLSGAHEACKTVSCGNPCA
1_1	5cwdA2	0.11	0.11	3.82	0.65	Neff-PPAS		---TKEAARSFCEAAARAAAESNDEEVAKIAAKACLEVQAGMPTKEAARSFCEAAKRAAKESNDEEVEKIAKKACKEVAKQAGMP
1_2	4ds1A	0.16	0.14	4.67	0.67	MUSTER		TPSDIDKLKEDILTISKDALDKYQ-LERDIAGTVKKQLDVKGNTWHVIVGSYVTHEKHFVYFYIGP---------LAFLVF--TA
1_3	6rmeA3	0.08	0.07	2.84	0.72	SPARKS-K		DYDTVQEILNISEKCLEKVIKDFGLRKEKSIGLVPNKYMIKYEVLEEAVIRIKKEIIKNKITAPYCAFNGGQDLWVDVG------
1_4	5v6hE	0.13	0.11	3.68	0.44	FFAS-3D		------EAKAKAIGKVDDLLELYMGIRDIDLATTMFEAGKDKSNPDE-------FAVALDETLGDFAFPDEFLFDVWGAISDM--
1_5	2plwA2	0.15	0.13	4.35	0.71	SPARKS-K		KIDDHLNSCELTLSITHFMEQYIN-IGGTYIVKMYLG-----SQTNNLKTYLKGM-FQLVHTTKPKS-REIYLVCKNFLGR----
1_6	5cwcA2	0.14	0.12	3.99	0.73	Neff-PPAS		DISEACRAAAEAFKRVAEAAKRAGITSSETLKRAIEEIRKRVEEGNDISEACRQAAEEFRKKAEELKRR----------------
1_7	5armA	0.15	0.14	4.74	0.47	CNFpred		--VQCVEMCFDCAQTCAACADACLVADLRHCIRLNLDCAEICVAAG-LQTCAEMCRMCEEECRR-EHCRICADVCK--ECETACR
1_8	3s63A	0.11	0.11	3.86	0.77	Neff-PPAS		TPKETCDLCQIALRTVFGHFGGNIPSRRKLVHQLKHECKRHFNYRRRCLLLMKVNSDLIFREMTDGSFKPMEVCLIMRECNPHDS
1_9	3zzpA	0.17	0.14	4.64	0.67	SPARKS-K		QGYTTWYQVEMPEDRVNDLARELRIRDN------VRRVMVVASTTPG--------RYEVNIVLNPNQLQNEKEIIQRALENYGA-
1_10	6xwiA	0.12	0.09	3.29	0.66	Neff-PPAS		-ASPCDKQKNYIDKQLLPIVNKAGCSRPEEVEERIRRALKKMGD--------------------TSCFDEILKGLKEIKCGGSWL
(a) ID1 is the number of template residues identical to query divided by number of aligned residues. (b) ID2 is the number of template residues identical to query divided by query sequence length. (c) Cov is equal the number of aligned template residues divided by query sequence length. (d) Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. (e) Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading1_[1-10].pdb.gz). (f) Template residues identical to query sequence are highlighted in color.

Rank	PDB hit	ID1	ID2	Cov	Norm. Zscore	Download alignment		20                  40                  60                  80                    |                   |                   |                   |
							SS Seq	CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHSSSCCCSSSCCCHHHHHHHHHCHSSSSSSSSCCCCCCCHHHHCCCCCCCCCCC GPADCCRMKECCTDRVNECLQRYSGREDKFVSFCYQEATVTCGSFNEIVGCCYGYQMCMIRVVKPNSLSGAHEACKTVSCGNPCA
2_1	GEN1	1.00	1.00	28.00	0.67	TEMP-REGEN		GPADCCRMKECCTDRVNECLQRYSGREDKFVSFCYQEATVTCGSFNEIVGCCYGYQMCMIRVVKPNSLSGAHEACKTVSCGNPCA
2_2	GEN2	1.00	1.00	28.00	0.67	TEMP-REGEN		GPADCCRMKECCTDRVNECLQRYSGREDKFVSFCYQEATVTCGSFNEIVGCCYGYQMCMIRVVKPNSLSGAHEACKTVSCGNPCA
2_3	GEN3	1.00	1.00	28.00	0.67	TEMP-REGEN		GPADCCRMKECCTDRVNECLQRYSGREDKFVSFCYQEATVTCGSFNEIVGCCYGYQMCMIRVVKPNSLSGAHEACKTVSCGNPCA
2_4	GEN4	1.00	1.00	28.00	0.67	TEMP-REGEN		GPADCCRMKECCTDRVNECLQRYSGREDKFVSFCYQEATVTCGSFNEIVGCCYGYQMCMIRVVKPNSLSGAHEACKTVSCGNPCA
2_5	GEN5	1.00	1.00	28.00	0.67	TEMP-REGEN		GPADCCRMKECCTDRVNECLQRYSGREDKFVSFCYQEATVTCGSFNEIVGCCYGYQMCMIRVVKPNSLSGAHEACKTVSCGNPCA
2_6	GEN6	1.00	1.00	28.00	0.67	TEMP-REGEN		GPADCCRMKECCTDRVNECLQRYSGREDKFVSFCYQEATVTCGSFNEIVGCCYGYQMCMIRVVKPNSLSGAHEACKTVSCGNPCA
2_7	GEN7	1.00	1.00	28.00	0.67	TEMP-REGEN		GPADCCRMKECCTDRVNECLQRYSGREDKFVSFCYQEATVTCGSFNEIVGCCYGYQMCMIRVVKPNSLSGAHEACKTVSCGNPCA
2_8	GEN8	1.00	1.00	28.00	0.67	TEMP-REGEN		GPADCCRMKECCTDRVNECLQRYSGREDKFVSFCYQEATVTCGSFNEIVGCCYGYQMCMIRVVKPNSLSGAHEACKTVSCGNPCA
2_9	GEN9	1.00	1.00	28.00	0.67	TEMP-REGEN		GPADCCRMKECCTDRVNECLQRYSGREDKFVSFCYQEATVTCGSFNEIVGCCYGYQMCMIRVVKPNSLSGAHEACKTVSCGNPCA
2_10	GEN10	1.00	1.00	28.00	0.67	TEMP-REGEN		GPADCCRMKECCTDRVNECLQRYSGREDKFVSFCYQEATVTCGSFNEIVGCCYGYQMCMIRVVKPNSLSGAHEACKTVSCGNPCA
(a) ID1 is the number of template residues identical to query divided by number of aligned residues. (b) ID2 is the number of template residues identical to query divided by query sequence length. (c) Cov is equal the number of aligned template residues divided by query sequence length. (d) Norm. Zscore is the normalized Z-score of the threading alignments from LOMETS, or PCC between the generated templates and background density map. (e) Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading2_[1-10].pdb.gz). (f) Template residues identical to query sequence are highlighted in color. (g) User-specified templates are always at the toppest ranks (with Norm. Zscore=1.00) if the user choose "yes" on "User-specified templates are already superposed into the density map?".