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DEMO-EM data download


This page includes the model created by DEMO-EM for each case.

Explanations:

  1. DEMO-EM final model---------the final model created by DEMO-EM.
  2. Domain definition--------------the predicted domain definition, where domains are separated by semicolons, while segments of a discontinuous domain are separated by commas. For example, the domain definition of 2c7cC (1-190,375-524;191-374;) means that the first domain is a discontinuous domain, where residue 1 to residue 190 belong to the first segment, and residue 375 to residue 524 belong to the second segment. "191-374" indicates that the second domain is a continuous domain, which covers residues from 191 to 374.
  3. Molprobity of final model------the Molprobity score of the final model calculated by "phenix.molprobity", which includes the following terms:
    1. Ramachandran outliers---the percentage of residues with Ramachandran outlier.
    2. favored--------------------the percentage Ramachandran favored residues.
    3. Rotamer outliers----------the percentage of residues with rotamer outliers.
    4. C-beta deviations---------the distance from the modeled C-beta position to the expected ideal position calculated from the backbone coordinates.
    5. Clashscore-----------------the number of serious steric overlaps (>0.4Å) per 1000 atoms.
    6. RMS(bonds)---------------the root-mean-square deviations from standard bond lengths.
    7. RMS(angles)---------------the root-mean-square deviations from standard bond angles.
    8. MolProbity score----------the weighted sum of clashes, Ramachandran not-favored and rotamer outliers.