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Template proteins with similar binding site:
Click to view | Rank | CscoreLB | PDB Hit | TM-score | RMSDa | IDENa | Cov. | BS-score | Lig. Name | Download Complex | Predicted binding site residues |
| 1 | 0.01 | 1eccA | 0.396 | 5.87 | 0.039 | 0.676 | 0.16 | PCP | complex1.pdb.gz | 2,3,7,8,9,10 |
| 2 | 0.01 | 1ecfA | 0.403 | 6.64 | 0.005 | 0.757 | 0.12 | PIN | complex2.pdb.gz | 10,11,14 |
| 3 | 0.01 | 1n1zA | 0.399 | 5.72 | 0.048 | 0.636 | 0.15 | POP | complex3.pdb.gz | 2,6,9 |
| 4 | 0.01 | 1ecgA | 0.401 | 6.65 | 0.014 | 0.749 | 0.13 | PIN | complex4.pdb.gz | 10,11,14 |
| 5 | 0.01 | 3juxA | 0.376 | 5.77 | 0.030 | 0.607 | 0.17 | ADP | complex5.pdb.gz | 6,7,9,10,11,12 |
| 6 | 0.01 | 1h17A | 0.407 | 5.96 | 0.031 | 0.700 | 0.20 | COA | complex6.pdb.gz | 6,7,9,13,15 |
| Click on the radio buttons to visualize predicted binding site and residues. |
(a) | CscoreLB is the confidence score of predicted binding site. CscoreLB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction. |
(b) | BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
| (c) | TM-score is a measure of global structural similarity between query and template protein. |
(d) | RMSDa the RMSD between residues that are structurally aligned by TM-align. |
(e) | IDENa is the percentage sequence identity in the structurally aligned region. |
(f) | Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein. |
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