MUSTER (MUlti-Source ThreadER) results

> MBD ,91 residues, "Easy" target

Your submitted sequence and predicted secondary structure (by PSI-PRED):

Seq:MKAPRVRVFRVEGMDCADCARKVASALEEVPGVVGVQVNYASGKAYLVLEREEALREAEA
SS :CCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCEEEEEECCCCCHHHHHH
Pos:123456789012345678901234567890123456789012345678901234567890

Seq:RLAPLGYRLLQAEGEGEGLPGPWPWALLSGG
SS :HHHHHCCEEEECCCCCCCCCCCHHHHHHHCC
Pos:1234567890123456789012345678901

For detailed information about output, please see readme file.



Models generated by MUSTER


MUSTER is a MUlti-Source ThreadER program,which considers six different sources: (1) sequence-derived profiles; (2) secondary structures; (3) structured-derived profiles; (4) solvent accessibility; (5) torsion angles( psi and phi angles); (6) hydrophobic scoring matrix. The optimized threading is found by global dynamic programming.

RankTemplateAlign_lengthCoverageZscoreSeq_idTypeTarget-template alignments3-D models from threading alignmentsFull-length models by MODELLER
11p6tA2790.86817.8050.228Goodalignment_1threading_1model_1
21fvsA720.79117.7030.153Goodalignment_2threading_2model_2
31yjtA740.81317.4110.284Goodalignment_3threading_3model_3
42gcfA730.80217.4030.288Goodalignment_4threading_4model_4
52kt2A690.75817.1630.362Goodalignment_5threading_5model_5
63dxsX730.80217.1490.247Goodalignment_6threading_6model_6
71mwzA730.80217.0070.329Goodalignment_7threading_7model_7
81y3kA760.83516.9570.197Goodalignment_8threading_8model_8
92ew9A1710.78016.7720.282Goodalignment_9threading_9model_9
101kvjA750.82416.7070.173Goodalignment_10threading_10model_10




Reference: S. Wu, Y. Zhang. MUSTER: Improving protein sequence profile-profile alignments by using multiple sources of structure information. Proteins: Structure, Function, and Bioinformatics 2008; 72: 547-556