Hello, Recently I had submitted a job for modeling which had following amino acid sequence:
E V M P A P M P E P E V K I V E K P V E V I V Y R D R V V Q A P A K W K P N G S V G V E L R T Q G K V E N K G K K A T E E N A R K G W A G K E P N V R L E T K A S V N F T E N Q N L E V R T R Q T H V L T K T D S D K E E S N H K D T Q V R I R H T Y N F G K L G S S K V G F K V A S Q Y L H D D H V D S L R T R A V F D F A D Y I Y S N S L F K T T A L E I G P S Y K Y V W G G N D D R Y Y N A L G L Y A N A E F E L P Y G F G F Q A E F E D A F T Y T S T G K G D G K R D K A K L G H A D F V L S H S L D L Y K E G K H S L A F L N E L E Y E T F W A W D K K D A S M E E W P H V D G H G R V N S E G K N K K W G A Y E L T Y T P K L Q Y N Y Q A T E F V K L Y A A I G G E Y V N R E N N K S T A R Y W R W N P T A W A G M K V T F
I got the model but the problem is, The result does not compare with a similar protein sequence which has been established in another closely related bacterium. I am curious to find the potential binding domains of my protein and also compare my protein with the protein established before and for which the sequence is below:
KEVMPAPTPAPKKVVEYVEKPVIVYRDREVAPAWRPNGSVDVQYRWYGNVENRTPKKEDPASPWLGDNVNAGRLQTLTKVNFTEKQTLEIRTRNYHTLMNPKDSQAADDQVRVRHFYKFGKLGSSKIDVTSRLEYKKNNGDAGRKQAEASVLFDFADYIYSNNFFKADKFGFRLGYQHKWAGHNSGVVGQPFNKGTQDNYFINFESEYTLPWGFSAELNAYNYYNVHNKKFATYNKGNKKSQFYGEIEAYLYQHTPLYKTNNVELSFDFEGGYDPYTWHQYKVVSAKDSNKYEVYMLPTLQVSYKPTDFVKLYAAAGAEYRNWAVTAESKAKNWRWQPTAWAGMKVTF