only 3 threading programs have out put, when i use nohup command

Hello
I don't know why each time i use nohup command to run ten programs in one time , i got the warning that only 3 threading programs have output, please check threading programs.
I want to know how can i resolve it, or I need to run one programs each times in local server.

start serial threading wdPPAS
pwd: couldn't find directory entry in ‘..’ with matching i-node
/mnt/nfs_storage9/zhangsiyu/local/app/I-TASSER/data/Hel_A_UBC+/wdPPAS_seq.fasta
pwd: couldn't find directory entry in ‘..’ with matching i-node
[makemat] FATAL ERROR: Unable to recover checkpoint from psitmp.chk

mv: cannot stat ‘psitmp.mtx’: No such file or directory
Exception in thread "main" java.lang.ArrayIndexOutOfBoundsException: 127
at c.a(c.java)
at c.main(c.java)
Illegal division by zero at /mnt/nfs_storage9/zhangsiyu/local/app/I-TASSER/data/Hel_A_UBC+/wdPPAS_seq.fasta line 348.
hostname: ubuntu-32
starting time: Sun Sep 27 10:26:54 HKT 2020
pwd: running Psi-blast .....

start serial threading wMUSTER
pwd: couldn't find directory entry in ‘..’ with matching i-node
/mnt/nfs_storage9/zhangsiyu/local/app/I-TASSER/data/Hel_A_UBC+/wMUSTER_seq.fasta
pwd: couldn't find directory entry in ‘..’ with matching i-node
hostname: ubuntu-32
starting time: Sun Sep 27 10:33:25 HKT 2020
pwd: running Psi-blast .....
running Psi-blast .....
==>2zvnC1 2kdiA 21.1378334064192 19.0763795821176
2zvnC1 2kdiA 23.17 21.95
score_flag=1
ending time: Sun Sep 27 11:21:44 HKT 2020

only 3 threading programs have output, please check threading programs