problem in 5.1 do clustering

Dear Zhang Lab Team:

I meet a problem in 5.1 do clustering that cp: cannot stat ‘./closc*.pdb’: No such file or directory cp: cannot stat ‘./combo*.pdb’: No such file or directory
.It have try download source code of SPICKER (i.e.,spicker.f) http://zhanglab.ccmb.med.umich.edu/SPICKER/ and put the spicker.f at the directory I-TASSERmod. gfortran -static -O3 -ffast-math -lm -o spicker45d spicker.f(there are a 0 Kb file gfortran under directory I-TASSERmod),delete all result and re-run the I-tasser, but it still not create the pdb files, I don‘t know how to fix it.

Your setting for running I-TASSER is:
-pkgdir = /mnt/nfs_storage9/zhangsiyu/local/app/I-TASSER/ITLIB/I-TASSER5.1
-libdir = /mnt/nfs_storage9/zhangsiyu/local/app/I-TASSER/ITLIB/I-TASSER5.1/ITLIB
-java_home = /usr
-seqname = seq.fasta
-datadir = /mnt/nfs_storage9/zhangsiyu/local/app/I-TASSER/data/Heim_UBC+
-outdir = /mnt/nfs_storage9/zhangsiyu/local/app/I-TASSER/data/Heim_UBC+
-runstyle = serial
-homoflag = real
-idcut = 1
-ntemp = 20
-nmodel = 5
-light = true
-hours = 1
-LBS = false
-EC = false
-GO = false

1. make seq.txt and rmsinp
Your protein contains 158 residues:
> seq.fasta
MIVIRLYRDIINKVNKISTDDFLLANEMQLVFDKQLNFEPVRDNLKQWKGYVGTIEDTEI
PIFANVYIQDGFPDVPPFVDITPKVNHPNVDEDGTLSMRLLAEWEPRYHIYQVMIDIKQL
FINVPAKTYKTKIKKPKEEQRYTGLPRATIPVRTLTQV
2.1 run Psi-blast
2.2 Predict secondary structure with PSSpred...
2.3 Predict solvent accessibility...
2.4 run pairmod
2.4.1 Use all templates
2.4.2 running pair ................
FORTRAN STOP
30000 6379375 total lib str & residues
number of observations 18.78456 1406813.
pair done
3.1 do threading
start serial threading PPAS
/tmp/zhangsiyu/ITseq.fasta
/mnt/nfs_storage9/zhangsiyu/local/app/I-TASSER/data/Heim_UBC+/PPAS_seq.fasta
hostname: ubuntu-32
starting time: Wed Oct 7 18:24:46 HKT 2020
pwd: /tmp/zhangsiyu/ITseq.fasta
running zalign .....
ending time: Wed Oct 7 18:30:04 HKT 2020

start serial threading dPPAS
/tmp/zhangsiyu/ITseq.fasta
/mnt/nfs_storage9/zhangsiyu/local/app/I-TASSER/data/Heim_UBC+/dPPAS_seq.fasta
hostname: ubuntu-32
starting time: Wed Oct 7 18:30:05 HKT 2020
pwd: /tmp/zhangsiyu/ITseq.fasta
running zalign .....
ending time: Wed Oct 7 18:39:44 HKT 2020

start serial threading dPPAS2
/tmp/zhangsiyu/ITseq.fasta
/mnt/nfs_storage9/zhangsiyu/local/app/I-TASSER/data/Heim_UBC+/dPPAS2_seq.fasta
hostname: ubuntu-32
starting time: Wed Oct 7 18:39:45 HKT 2020
pwd: /tmp/zhangsiyu/ITseq.fasta
running zalign .....
ending time: Wed Oct 7 18:49:23 HKT 2020

start serial threading Env-PPAS
/tmp/zhangsiyu/ITseq.fasta
/mnt/nfs_storage9/zhangsiyu/local/app/I-TASSER/data/Heim_UBC+/Env-PPAS_seq.fasta
At line 697 of file zal3.f
Fortran runtime error: No such file or directory
hostname: ubuntu-32
starting time: Wed Oct 7 18:49:25 HKT 2020
pwd: /tmp/zhangsiyu/ITseq.fasta
running zalign .....
ending time: Wed Oct 7 19:00:49 HKT 2020

start serial threading MUSTER
/tmp/zhangsiyu/ITseq.fasta
/mnt/nfs_storage9/zhangsiyu/local/app/I-TASSER/data/Heim_UBC+/MUSTER_seq.fasta
hostname: ubuntu-32
starting time: Wed Oct 7 19:00:51 HKT 2020
pwd: /tmp/zhangsiyu/ITseq.fasta
running Psi-blast .....
running zalign .....
#2 residue inconsistent ! /mnt/nfs_storage9/zhangsiyu/local/app/I-TASSER/ITLIB/I-TASSER5.1/ITLIB/DEP/6lnwA.dep 129 495

==>2e2cA 2e2cA 20.5130065703467 15.2974002864183
2e2cA 2e2cA 17 17
score_flag=1
ending time: Wed Oct 7 19:14:05 HKT 2020

start serial threading wPPAS
/tmp/zhangsiyu/ITseq.fasta
/mnt/nfs_storage9/zhangsiyu/local/app/I-TASSER/data/Heim_UBC+/wPPAS_seq.fasta
hostname: ubuntu-32
starting time: Wed Oct 7 19:14:06 HKT 2020
pwd: /tmp/zhangsiyu/ITseq.fasta
running Psi-blast .....
ending time: Wed Oct 7 19:30:11 HKT 2020

start serial threading wdPPAS
/tmp/zhangsiyu/ITseq.fasta
/mnt/nfs_storage9/zhangsiyu/local/app/I-TASSER/data/Heim_UBC+/wdPPAS_seq.fasta
hostname: ubuntu-32
starting time: Wed Oct 7 19:30:12 HKT 2020
pwd: /tmp/zhangsiyu/ITseq.fasta
running Psi-blast .....
ending time: Wed Oct 7 19:54:41 HKT 2020

start serial threading wMUSTER
/tmp/zhangsiyu/ITseq.fasta
/mnt/nfs_storage9/zhangsiyu/local/app/I-TASSER/data/Heim_UBC+/wMUSTER_seq.fasta
hostname: ubuntu-32
starting time: Wed Oct 7 19:54:42 HKT 2020
pwd: /tmp/zhangsiyu/ITseq.fasta
running Psi-blast .....
running Psi-blast .....
==>4gprA 1x23D 25.8754539285638 20.4406050103608
4gprA 1x23D 17.09 17.09
score_flag=1
ending time: Wed Oct 7 20:24:05 HKT 2020

3.2 make restraints
type= easy, n_good=40, M0= 8, M1_for_medm=1.6, n_sg= 8 role=SEQ
domain2=no
type=easy----n_temp_use_for_restraints=20
4.1 run simulation
run 14 serial simulations
run simulation job 1 / 14
run simulation job 2 / 14
run simulation job 3 / 14
run simulation job 4 / 14
run simulation job 5 / 14
run simulation job 6 / 14
run simulation job 7 / 14
run simulation job 8 / 14
run simulation job 9 / 14
run simulation job 10 / 14
run simulation job 11 / 14
run simulation job 12 / 14
run simulation job 13 / 14
run simulation job 14 / 14
5.1 do clustering
No. of trajectory files: 62
8.000000 3.500000 12.00000
cp: cannot stat ‘./closc*.pdb’: No such file or directory
cp: cannot stat ‘./combo*.pdb’: No such file or directory
5.2 build full-atomic model

hello, are you using the

hello,

are you using the I-TASEER suite, correct?

could you first check if there are any rep*.bz2 in the folder /mnt/nfs_storage9/zhangsiyu/local/app/I-TASSER/data/Heim_UBC+/

Best
IT team