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Please help me, the protein PDB file I predicted with D-I-TSER does not dock with the ligand

Last post by lxp2695901 « Tue Jul 08, 2025 4:22 pm

by lxp2695901 » Tue Jul 08, 2025 4:22 pm

0 Replies

3 Views

Last post by lxp2695901
Tue Jul 08, 2025 4:22 pm
Site reloading but no results

Last post by Mableaugherty « Mon Jul 07, 2025 2:08 am
Replies: 2
by Markus » Wed Jul 02, 2025 10:13 am

2 Replies

287 Views

Last post by Mableaugherty
Mon Jul 07, 2025 2:08 am
Using COACH

Last post by ITASSERteam « Sun Jul 06, 2025 2:15 am
Replies: 1
by usualtrident » Wed Jul 02, 2025 3:21 am

1 Replies

293 Views

Last post by ITASSERteam
Sun Jul 06, 2025 2:15 am
I would like to know the meaning represented by each dimension of the contact map, distance map and HB map.

Last post by Liuyu_20000419 « Thu Jul 03, 2025 7:56 am
Replies: 2
by Liuyu_20000419 » Tue Jun 24, 2025 3:28 pm

2 Replies

21795 Views

Last post by Liuyu_20000419
Thu Jul 03, 2025 7:56 am
Regarding Modelling of Pentamer Nanobody

Last post by peoplebreast « Wed Jul 02, 2025 8:16 am
Replies: 2
by Ahbab Ali » Thu Oct 26, 2023 4:30 am

2 Replies

50899 Views

Last post by peoplebreast
Wed Jul 02, 2025 8:16 am
why the downloaded version of I-TASSER does not build the "index" file?

Last post by ITASSERteam « Wed Jul 02, 2025 8:01 am
Replies: 1
by Poters » Tue Jul 01, 2025 10:06 am

1 Replies

881 Views

Last post by ITASSERteam
Wed Jul 02, 2025 8:01 am
error in STRUM

Last post by zbiao « Wed Jul 02, 2025 6:12 am
Replies: 2
by neha18_cmm » Sat Oct 12, 2024 8:27 am

2 Replies

83381 Views

Last post by zbiao
Wed Jul 02, 2025 6:12 am
Modeling a protein with greater than 1,500aa

Last post by ITASSERteam « Tue Jul 01, 2025 7:08 pm
Replies: 1
by jfreestone@mcw.edu » Mon Jun 30, 2025 5:44 pm

1 Replies

2686 Views

Last post by ITASSERteam
Tue Jul 01, 2025 7:08 pm
USalign - sequence dependent alignment

Last post by martingb « Tue Jul 01, 2025 3:31 pm
Replies: 2
by martingb » Mon Jun 30, 2025 11:53 am

2 Replies

4158 Views

Last post by martingb
Tue Jul 01, 2025 3:31 pm
How does it compare with classic docking

Last post by zbiao « Tue Jul 01, 2025 5:52 am
Replies: 2
by Trisheye » Mon Jun 16, 2025 9:25 am

2 Replies

2575 Views

Last post by zbiao
Tue Jul 01, 2025 5:52 am
Unable to Download the Library File 'CE.tar.bz2'

Last post by Tianrui « Tue Jul 01, 2025 3:56 am
Replies: 1
by liujie1993228 » Sat Jun 28, 2025 2:35 am

1 Replies

7179 Views

Last post by Tianrui
Tue Jul 01, 2025 3:56 am
D-I-TASSER results

Last post by TrinityNava « Mon Jun 30, 2025 2:32 am
Replies: 8
by Abd_Compbio » Fri Jun 06, 2025 7:03 am

8 Replies

141591 Views

Last post by TrinityNava
Mon Jun 30, 2025 2:32 am
Request for TM-score and RMSD of Other I-TASSER Models

Last post by ITASSERteam « Sat Jun 28, 2025 7:52 am
Replies: 1
by bladehare » Mon Jun 23, 2025 7:50 am

1 Replies

21716 Views

Last post by ITASSERteam
Sat Jun 28, 2025 7:52 am
Protien format

Last post by Eveive « Fri Jun 27, 2025 7:20 am
Replies: 3
by Muhammed » Sat Jun 08, 2024 7:54 am

3 Replies

122016 Views

Last post by Eveive
Fri Jun 27, 2025 7:20 am
how to view the interaction sites between the two proteins in the results?

Last post by Lillian Quinn « Tue Jun 24, 2025 2:29 am
Replies: 2
by anhuifei » Wed Jun 04, 2025 2:41 am

2 Replies

27022 Views

Last post by Lillian Quinn
Tue Jun 24, 2025 2:29 am
COACH

Last post by raceinrain « Fri Jun 20, 2025 3:45 pm
Replies: 9
by MERT YENEN » Mon Aug 19, 2024 7:24 am

9 Replies

284449 Views

Last post by raceinrain
Fri Jun 20, 2025 3:45 pm
itasser model comptability with ucsf chimera strucure minimization

Last post by Williami « Tue Jun 17, 2025 3:07 am
Replies: 4
by zbu@ccny.cuny.edu » Wed Jan 17, 2024 4:31 pm

4 Replies

33255 Views

Last post by Williami
Tue Jun 17, 2025 3:07 am
Use of D-I-TASSER for structure prediction

Last post by junh « Mon Jun 16, 2025 1:20 pm
Replies: 6
by Abd_Compbio » Sun Jun 08, 2025 8:46 am

6 Replies

178663 Views

Last post by junh
Mon Jun 16, 2025 1:20 pm
the two TM-scores from US-align show a large discrepancy

Last post by loraleednelson « Mon Jun 16, 2025 6:30 am
Replies: 9
by evans » Tue Oct 08, 2024 6:12 am

9 Replies

407293 Views

Last post by loraleednelson
Mon Jun 16, 2025 6:30 am
Results not available from COACH server

Last post by ITASSERteam « Fri Jun 06, 2025 12:03 pm
Replies: 6
by sheila.artesero » Fri May 03, 2024 9:44 am

6 Replies

44556 Views

Last post by ITASSERteam
Fri Jun 06, 2025 12:03 pm
CR-I-Tasser

Last post by Wagary89 « Thu Jun 05, 2025 3:23 am
Replies: 3
by mforoozm » Sun Apr 07, 2024 4:11 pm

3 Replies

147747 Views

Last post by Wagary89
Thu Jun 05, 2025 3:23 am
I really hope I can retrieve the sequence that I submitted.

Last post by hujun1 « Thu Jun 05, 2025 1:39 am
Replies: 4
by Wasen1989 » Wed Jun 04, 2025 6:50 am

4 Replies

9374 Views

Last post by hujun1
Thu Jun 05, 2025 1:39 am
I-TASSER standalone errors

Last post by Craig C. Bennett « Wed Jun 04, 2025 3:06 am
Replies: 6
by harvey@bucknell.edu » Tue Mar 19, 2024 6:16 pm

6 Replies

216054 Views

Last post by Craig C. Bennett
Wed Jun 04, 2025 3:06 am
Use DeepMSA2 output in ColabFold or AlphaFold

Last post by maruusa « Tue Jun 03, 2025 4:09 am
Replies: 2
by Qiping » Wed Mar 13, 2024 3:28 pm

2 Replies

105398 Views

Last post by maruusa
Tue Jun 03, 2025 4:09 am
Please make sure the directory /tmp/ is writable for you

Last post by sloperun3az « Sat May 31, 2025 3:18 am
Replies: 5
by tgrear » Wed Sep 07, 2022 8:22 pm

5 Replies

106575 Views

Last post by sloperun3az
Sat May 31, 2025 3:18 am
D-I-TASSER jobs can't be completed.

Last post by junh « Fri May 30, 2025 4:44 pm
Replies: 2
by sunnyrab » Fri May 30, 2025 2:55 am

2 Replies

46735 Views

Last post by junh
Fri May 30, 2025 4:44 pm
I-TASSER results for your protein: highlighting AA

Last post by bonkmoneybag « Thu May 29, 2025 7:56 am
Replies: 1
by olescaff@utmb.edu » Tue Oct 15, 2024 7:31 pm

1 Replies

98992 Views

Last post by bonkmoneybag
Thu May 29, 2025 7:56 am
Unable to download databases for DeepMSA2

Last post by junh « Sun May 25, 2025 2:03 am
Replies: 4
by dimi » Fri May 16, 2025 12:48 pm

4 Replies

206780 Views

Last post by junh
Sun May 25, 2025 2:03 am
COACH job still running after 1 month

Last post by ITASSERteam « Thu May 22, 2025 5:47 am
Replies: 2
by chuatx » Wed May 29, 2024 6:12 am

2 Replies

239282 Views

Last post by ITASSERteam
Thu May 22, 2025 5:47 am
I have question.

Last post by Vennpaul « Tue Dec 03, 2024 4:29 am
Replies: 2
by Butertench1975 » Wed Nov 06, 2024 6:44 am

2 Replies

189893 Views

Last post by Vennpaul
Tue Dec 03, 2024 4:29 am
Some files may missing in CR-I-TASSER

Last post by responsivecats « Tue Dec 03, 2024 2:43 am
Replies: 2
by cooper » Tue Apr 19, 2022 2:16 am

2 Replies

177691 Views

Last post by responsivecats
Tue Dec 03, 2024 2:43 am
Help with CRISPR Base Editing Efficiency in Cell Cultures

Last post by pigkang « Mon Dec 02, 2024 7:38 am
Replies: 2
by JacquelineJCastle » Sat Nov 16, 2024 1:47 am

2 Replies

93096 Views

Last post by pigkang
Mon Dec 02, 2024 7:38 am
DeepMSA error from CR-I-TASSER

Last post by saucesavings « Tue Nov 26, 2024 5:05 am
Replies: 4
by ning » Sat Mar 04, 2023 3:17 pm

4 Replies

159884 Views

Last post by saucesavings
Tue Nov 26, 2024 5:05 am
DMFold, DeepMSA2 and I-TASSER-based methods updates

Last post by TomSimth « Mon Nov 18, 2024 9:38 am
Replies: 3
by jlspzw » Sat Feb 10, 2024 9:18 pm

3 Replies

137296 Views

Last post by TomSimth
Mon Nov 18, 2024 9:38 am
Take into account pLDDT into TM-score

Last post by throughyuletide « Fri Nov 15, 2024 2:33 am
Replies: 3
by mariaartlle » Fri Dec 09, 2022 11:13 am

3 Replies

150742 Views

Last post by throughyuletide
Fri Nov 15, 2024 2:33 am
I-TASSER Illegal division by zero during MUSTER

Last post by khainhienluu « Sat Nov 09, 2024 9:35 am
Replies: 9
by jimgene » Sun Jan 29, 2023 8:12 am

9 Replies

293125 Views

Last post by khainhienluu
Sat Nov 09, 2024 9:35 am
Information regarding restraint files generated and used by I-TASSER standalone program

Last post by illnessused « Mon Nov 04, 2024 1:42 am
Replies: 4
by rupesh » Wed Aug 31, 2022 9:53 am

4 Replies

176057 Views

Last post by illnessused
Mon Nov 04, 2024 1:42 am
probelm in demo2

Last post by phisola25 « Fri Oct 25, 2024 5:16 pm
Replies: 3
by ladimafakher » Sat Aug 26, 2023 12:33 pm

3 Replies

166654 Views

Last post by phisola25
Fri Oct 25, 2024 5:16 pm
error when running i-tasser

Last post by emmausa « Tue Oct 22, 2024 1:48 am
Replies: 7
by fatin_izz » Tue Jul 06, 2021 8:38 pm

7 Replies

199129 Views

Last post by emmausa
Tue Oct 22, 2024 1:48 am
java.lang.NumberFormatException: For input string: -NAN

Last post by sarausa « Tue Oct 22, 2024 1:46 am
Replies: 9
by afif » Fri Feb 09, 2024 8:32 pm

9 Replies

257781 Views

Last post by sarausa
Tue Oct 22, 2024 1:46 am

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