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Use of D-I-TASSER for structure prediction

Last post by Abd_Compbio « Sun Jun 08, 2025 3:34 pm
Replies: 2
by Abd_Compbio » Sun Jun 08, 2025 8:46 am

2 Replies

677 Views

Last post by Abd_Compbio
Sun Jun 08, 2025 3:34 pm
D-I-TASSER results

Last post by Abd_Compbio « Sun Jun 08, 2025 3:33 pm
Replies: 2
by Abd_Compbio » Fri Jun 06, 2025 7:03 am

2 Replies

798 Views

Last post by Abd_Compbio
Sun Jun 08, 2025 3:33 pm
how to view the interaction sites between the two proteins in the results?

Last post by ITASSERteam « Fri Jun 06, 2025 12:07 pm
Replies: 1
by anhuifei » Wed Jun 04, 2025 2:41 am

1 Replies

3682 Views

Last post by ITASSERteam
Fri Jun 06, 2025 12:07 pm
Results not available from COACH server

Last post by ITASSERteam « Fri Jun 06, 2025 12:03 pm
Replies: 6
by sheila.artesero » Fri May 03, 2024 9:44 am

6 Replies

17647 Views

Last post by ITASSERteam
Fri Jun 06, 2025 12:03 pm
the two TM-scores from US-align show a large discrepancy

Last post by a1t92t « Thu Jun 05, 2025 1:01 pm
Replies: 8
by evans » Tue Oct 08, 2024 6:12 am

8 Replies

282868 Views

Last post by a1t92t
Thu Jun 05, 2025 1:01 pm
CR-I-Tasser

Last post by Wagary89 « Thu Jun 05, 2025 3:23 am
Replies: 3
by mforoozm » Sun Apr 07, 2024 4:11 pm

3 Replies

134798 Views

Last post by Wagary89
Thu Jun 05, 2025 3:23 am
I really hope I can retrieve the sequence that I submitted.

Last post by hujun1 « Thu Jun 05, 2025 1:39 am
Replies: 4
by Wasen1989 » Wed Jun 04, 2025 6:50 am

4 Replies

1364 Views

Last post by hujun1
Thu Jun 05, 2025 1:39 am
itasser model comptability with ucsf chimera strucure minimization

Last post by Rosalyarza « Wed Jun 04, 2025 4:25 am
Replies: 3
by zbu@ccny.cuny.edu » Wed Jan 17, 2024 4:31 pm

3 Replies

21658 Views

Last post by Rosalyarza
Wed Jun 04, 2025 4:25 am
I-TASSER standalone errors

Last post by Craig C. Bennett « Wed Jun 04, 2025 3:06 am
Replies: 6
by harvey@bucknell.edu » Tue Mar 19, 2024 6:16 pm

6 Replies

194142 Views

Last post by Craig C. Bennett
Wed Jun 04, 2025 3:06 am
Use DeepMSA2 output in ColabFold or AlphaFold

Last post by maruusa « Tue Jun 03, 2025 4:09 am
Replies: 2
by Qiping » Wed Mar 13, 2024 3:28 pm

2 Replies

76570 Views

Last post by maruusa
Tue Jun 03, 2025 4:09 am
Inquiry of PEPPI results

Last post by herrylauu « Mon Jun 02, 2025 4:23 am
Replies: 2
by xiz052 » Wed Jul 10, 2024 10:15 pm

2 Replies

76874 Views

Last post by herrylauu
Mon Jun 02, 2025 4:23 am
Calculation of TM-score and rmsd for all predicted models by I-TASSER

Last post by emmausa0106 « Mon Jun 02, 2025 3:16 am
Replies: 2
by FYaghoobizadeh » Tue Jul 23, 2024 4:00 pm

2 Replies

69613 Views

Last post by emmausa0106
Mon Jun 02, 2025 3:16 am
Please make sure the directory /tmp/ is writable for you

Last post by sloperun3az « Sat May 31, 2025 3:18 am
Replies: 5
by tgrear » Wed Sep 07, 2022 8:22 pm

5 Replies

102066 Views

Last post by sloperun3az
Sat May 31, 2025 3:18 am
Protien format

Last post by otiscavin « Sat May 31, 2025 1:58 am
Replies: 1
by Muhammed » Sat Jun 08, 2024 7:54 am

1 Replies

92602 Views

Last post by otiscavin
Sat May 31, 2025 1:58 am
D-I-TASSER jobs can't be completed.

Last post by junh « Fri May 30, 2025 4:44 pm
Replies: 2
by sunnyrab » Fri May 30, 2025 2:55 am

2 Replies

21658 Views

Last post by junh
Fri May 30, 2025 4:44 pm
I-TASSER results for your protein: highlighting AA

Last post by bonkmoneybag « Thu May 29, 2025 7:56 am
Replies: 1
by olescaff@utmb.edu » Tue Oct 15, 2024 7:31 pm

1 Replies

89275 Views

Last post by bonkmoneybag
Thu May 29, 2025 7:56 am
Unable to download databases for DeepMSA2

Last post by junh « Sun May 25, 2025 2:03 am
Replies: 4
by dimi » Fri May 16, 2025 12:48 pm

4 Replies

106248 Views

Last post by junh
Sun May 25, 2025 2:03 am
COACH job still running after 1 month

Last post by ITASSERteam « Thu May 22, 2025 5:47 am
Replies: 2
by chuatx » Wed May 29, 2024 6:12 am

2 Replies

159635 Views

Last post by ITASSERteam
Thu May 22, 2025 5:47 am
I have question.

Last post by Vennpaul « Tue Dec 03, 2024 4:29 am
Replies: 2
by Butertench1975 » Wed Nov 06, 2024 6:44 am

2 Replies

139193 Views

Last post by Vennpaul
Tue Dec 03, 2024 4:29 am
Some files may missing in CR-I-TASSER

Last post by responsivecats « Tue Dec 03, 2024 2:43 am
Replies: 2
by cooper » Tue Apr 19, 2022 2:16 am

2 Replies

176240 Views

Last post by responsivecats
Tue Dec 03, 2024 2:43 am
Help with CRISPR Base Editing Efficiency in Cell Cultures

Last post by pigkang « Mon Dec 02, 2024 7:38 am
Replies: 2
by JacquelineJCastle » Sat Nov 16, 2024 1:47 am

2 Replies

93096 Views

Last post by pigkang
Mon Dec 02, 2024 7:38 am
DeepMSA error from CR-I-TASSER

Last post by saucesavings « Tue Nov 26, 2024 5:05 am
Replies: 4
by ning » Sat Mar 04, 2023 3:17 pm

4 Replies

126826 Views

Last post by saucesavings
Tue Nov 26, 2024 5:05 am
DMFold, DeepMSA2 and I-TASSER-based methods updates

Last post by TomSimth « Mon Nov 18, 2024 9:38 am
Replies: 3
by jlspzw » Sat Feb 10, 2024 9:18 pm

3 Replies

107325 Views

Last post by TomSimth
Mon Nov 18, 2024 9:38 am
Take into account pLDDT into TM-score

Last post by throughyuletide « Fri Nov 15, 2024 2:33 am
Replies: 3
by mariaartlle » Fri Dec 09, 2022 11:13 am

3 Replies

120916 Views

Last post by throughyuletide
Fri Nov 15, 2024 2:33 am
I-TASSER Illegal division by zero during MUSTER

Last post by khainhienluu « Sat Nov 09, 2024 9:35 am
Replies: 9
by jimgene » Sun Jan 29, 2023 8:12 am

9 Replies

200538 Views

Last post by khainhienluu
Sat Nov 09, 2024 9:35 am
Information regarding restraint files generated and used by I-TASSER standalone program

Last post by illnessused « Mon Nov 04, 2024 1:42 am
Replies: 4
by rupesh » Wed Aug 31, 2022 9:53 am

4 Replies

140581 Views

Last post by illnessused
Mon Nov 04, 2024 1:42 am
EvoDesign

Last post by nanalyly « Wed Oct 30, 2024 9:43 am
Replies: 2
by saifrahm » Mon Jan 22, 2024 8:13 pm

2 Replies

147576 Views

Last post by nanalyly
Wed Oct 30, 2024 9:43 am
probelm in demo2

Last post by phisola25 « Fri Oct 25, 2024 5:16 pm
Replies: 3
by ladimafakher » Sat Aug 26, 2023 12:33 pm

3 Replies

137262 Views

Last post by phisola25
Fri Oct 25, 2024 5:16 pm
error when running i-tasser

Last post by emmausa « Tue Oct 22, 2024 1:48 am
Replies: 7
by fatin_izz » Tue Jul 06, 2021 8:38 pm

7 Replies

167579 Views

Last post by emmausa
Tue Oct 22, 2024 1:48 am
java.lang.NumberFormatException: For input string: -NAN

Last post by sarausa « Tue Oct 22, 2024 1:46 am
Replies: 9
by afif » Fri Feb 09, 2024 8:32 pm

9 Replies

240967 Views

Last post by sarausa
Tue Oct 22, 2024 1:46 am
error in STRUM

Last post by neha18_cmm « Sat Oct 12, 2024 8:27 am

by neha18_cmm » Sat Oct 12, 2024 8:27 am

0 Replies

77280 Views

Last post by neha18_cmm
Sat Oct 12, 2024 8:27 am
BioLip data

Last post by zcx@umich.edu « Wed Oct 09, 2024 1:59 am
Replies: 1
by asnascimento » Tue Sep 17, 2024 7:33 pm

1 Replies

112421 Views

Last post by zcx@umich.edu
Wed Oct 09, 2024 1:59 am
[3D structure require] The new protein no information of domain available

Last post by markangelo « Tue Oct 08, 2024 1:49 am
Replies: 7
by KOUKAB IMRAN » Mon May 31, 2021 5:09 am

7 Replies

139051 Views

Last post by markangelo
Tue Oct 08, 2024 1:49 am
output interpretation

Last post by terassda « Fri Sep 20, 2024 9:27 am
Replies: 9
by nmrworker » Mon May 10, 2021 4:32 pm

9 Replies

71191 Views

Last post by terassda
Fri Sep 20, 2024 9:27 am
is there a version of the software that can read cryo-EM density maps and mmcif input files?

Last post by ITASSERteam « Sat Sep 14, 2024 2:23 am
Replies: 3
by zbiao » Fri Jul 12, 2024 7:50 am

3 Replies

43222 Views

Last post by ITASSERteam
Sat Sep 14, 2024 2:23 am
cpxDeepMSA

Last post by irlpilchard « Mon Sep 09, 2024 4:56 am
Replies: 1
by JakobReber » Thu Aug 29, 2024 12:37 pm

1 Replies

10939 Views

Last post by irlpilchard
Mon Sep 09, 2024 4:56 am
IonCom - Missing Probabilities for Predicted Binding Sites

Last post by XiZhang « Mon Sep 02, 2024 1:57 am
Replies: 1
by saakdr@missouri.edu » Sat Aug 31, 2024 4:08 am

1 Replies

13146 Views

Last post by XiZhang
Mon Sep 02, 2024 1:57 am
Quark/C-quark/c-i-tasser job has been running for a month

Last post by XiZhang « Fri Aug 30, 2024 3:22 am
Replies: 2
by rafail01 » Sat Jul 13, 2024 7:00 am

2 Replies

17557 Views

Last post by XiZhang
Fri Aug 30, 2024 3:22 am
I want to cancel/delete my job

Last post by XiZhang « Tue Aug 27, 2024 8:36 am
Replies: 1
by neginbagherisums » Fri Jul 26, 2024 7:19 pm

1 Replies

15700 Views

Last post by XiZhang
Tue Aug 27, 2024 8:36 am
COACH

Last post by hujun « Tue Aug 27, 2024 3:41 am
Replies: 8
by MERT YENEN » Mon Aug 19, 2024 7:24 am

8 Replies

219502 Views

Last post by hujun
Tue Aug 27, 2024 3:41 am

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