Search found 2 matches

by user366312
Tue Nov 01, 2022 8:50 pm
Forum: Main Forum
Topic: Generaing seq.dat and seq.txt files with REMO
Replies: 3
Views: 3455

Re: Generaing seq.dat and seq.txt files with REMO

There is no file named [nr.filter] inside [nr.tar.gz]. I have the following files inside [nr.tar.gz] --- user_name@server_name:~/spatial/reconstruction_tools/nr$ ls nr nr.00.pnd nr.00.psq nr.01.pnd nr.01.psi nr.02.pin nr.02.psd nr.03.phr nr.03.pni nr.03.psq nr.00.phr nr.00.pni nr.01.phr nr.01.pni nr...
by user366312
Sat Oct 29, 2022 2:39 pm
Forum: Main Forum
Topic: Generaing seq.dat and seq.txt files with REMO
Replies: 3
Views: 3455

Generaing seq.dat and seq.txt files with REMO

I am trying to generate seq.dat and seq.txt files myself, so I can use them with REMO. I am using mkseq.pl script. The following was my command: user_name@server_name:~/spatial/reconstruction_tools/remo_v2$ perl mkseq.pl /home/spatial/input_pdb/pdb1a6j.pdb 1 PSIPRED finished user_name@server_name:~/...