Search found 7 matches

by jimgene
Tue Feb 07, 2023 2:45 am
Forum: Main Forum
Topic: I-TASSER Illegal division by zero during MUSTER
Replies: 8
Views: 8733

Re: I-TASSER Illegal division by zero during MUSTER

Hi, https://drive.google.com/file/d/1EK1eQ70g9oP0CW9lbztPQTIxwDizj5ZN/view?usp=share_link extract with: tar -xvf dit-debug.tar The contained dit-debug/ folder contains files created during I-TASSERmod/simulationmod. And you can directly execute ./cas_DIT7e9p_1A once you have entered the dit-debug fo...
by jimgene
Mon Feb 06, 2023 6:20 am
Forum: Main Forum
Topic: I-TASSER Illegal division by zero during MUSTER
Replies: 8
Views: 8733

Re: I-TASSER Illegal division by zero during MUSTER

Thank you! With the substitudes, MUSTER finishes except an abnormal message: ====== running zalign ..... #2 residue inconsistent ! /nfs/ITLIB/DEP/6lnwA.dep 129 495 ====== However another critical issue comes out in "4.1 run simulation" while executing I-TASSERmod/dcasdpo4v2.1. The stdout g...
by jimgene
Mon Jan 30, 2023 1:39 am
Forum: Main Forum
Topic: I-TASSER Illegal division by zero during MUSTER
Replies: 8
Views: 8733

Re: I-TASSER Illegal division by zero during MUSTER

"more $ITlib/PDB/list" gives 96666, and "ls $ITlib/PDB/ | wc -l" gives 98431. When running "./zalign 7.01 0.55 0.66 1.6 -0.99 0.31 0.19 0 1.0 0.39 0.19" in centos instead of ubuntu, it outputs: ===== At line 522 of file zal33.f Fortran runtime error: End of file ===== A...
by jimgene
Sun Jan 29, 2023 10:17 am
Forum: Main Forum
Topic: I-TASSER Illegal division by zero during MUSTER
Replies: 8
Views: 8733

Re: I-TASSER Illegal division by zero during MUSTER

It seems like ./zalign crashed with Segmentation fault. Even run the example fasta you provided it still crashes.
by jimgene
Sun Jan 29, 2023 8:12 am
Forum: Main Forum
Topic: I-TASSER Illegal division by zero during MUSTER
Replies: 8
Views: 8733

I-TASSER Illegal division by zero during MUSTER

Hi, When executing to printf `./zalign 7.01 0.55 0.66 1.6 -0.99 0.31 0.19 0 1.0 0.39 0.19`; in MUSTERmod it gives an empty result file, -rw-r--r-- 1 root root 0 Jan 29 16:06 rst.dat with no error message given. And I have checked all the files in in.dd, they all exist. I wonder what could be the pro...
by jimgene
Sat Jan 28, 2023 4:16 am
Forum: Main Forum
Topic: D-I-TASSER failed at pairmod
Replies: 2
Views: 9301

Re: D-I-TASSER failed at pairmod

Never mind. I realize it is looking for ITLIB/CNT dependencies so I am downloading the libs now. Thank you.
by jimgene
Fri Jan 27, 2023 8:45 am
Forum: Main Forum
Topic: D-I-TASSER failed at pairmod
Replies: 2
Views: 9301

D-I-TASSER failed at pairmod

Hi there, when executing the runI-TASSER.pl script, the program encounters an error which I think might due to missing dependencies, for example, Gaussian. Below is the error mssage when executing: print `./pair $plibdir/`; ================== PGFIO/stdio: No such file or directory PGFIO-F-/OPEN/unit...