Zhanglab forum

"top 5 final model" shows the final I-TASSER predicted model for your target sequence. " top 10 Identified stuctural analogs in PDB" shows the templates that may have similar structure to your target sequence, which are found in PDB. These templates are used to guide the structur...

Yes. Models shown in the "Final Full-length Models Predicted by I-TASSER-MTD" part is the final and full model predicted by I-TASSER-MTD. "Top 10 Full-length Templates for Domain Assembly" just shows the templates used to guide the domain assembly for the full-length model constr...

Which server do you use and what's the jobID? I will check for you.

You can try to use the following servers which can use cryo-EM density maps to guide the structure modelling and domain assembly:
https://zhanggroup.org/DEMO-EM/
https://zhanggroup.org/CR-I-TASSER/

Sorry! There is an issue of file systems on the EXPANSE cluster. We still need some time to deal with it.

Sorry! The InCom server is not working now. We are trying to repair it.

Sorry! The InCom server is not working now. We are trying to repair it.

sambitmishra wrote: ↑Mon Apr 25, 2022 4:55 pm Hi there,

Also wanted to ask: Does the I-TASSER webserver set the command line option -light to True when running calculations?

Thanks,
Sambit.

Thank you! The I-TASSER server uses the standard version rather than the light version.

Hello, I'm from the NIH HPC team and Sambit also raised this issue with us. So is there a way around the issue? If we separately obtain HHsearch, can we set it up so that LOMETS uses it? And is there anything else we could set up separately? thanks and regards Afif Hi, Yes! You can search the templ...

Which server did you use? I will check it for you.