Search found 5 matches

by skyto
Sun May 22, 2022 5:05 am
Forum: Main Forum
Topic: Problems with C-QUARK standalone
Replies: 11
Views: 9531

Re: Problems with C-QUARK standalone

No. I use other software.
by skyto
Sun Aug 08, 2021 2:17 am
Forum: Main Forum
Topic: Problems with C-QUARK standalone
Replies: 11
Views: 9531

Re: Problems with C-QUARK standalone

The same error: Error in /home/skyto/C-QUARK-1.0/contact/DeepMSA/bin/hhblits: could not open file 'hms0_64267115.hhm' grep: /tmp/skyto/MSA_6484835649/hmmsearch.a3m: No such file or directory /home/skyto/C-QUARK-1.0/contact/DeepMSA/bin/rmRedundantSeq 99 60 /tmp/skyto/MSA_6484835649/hmmsearch.aln > /t...
by skyto
Wed Aug 04, 2021 6:38 am
Forum: Main Forum
Topic: Problems with C-QUARK standalone
Replies: 11
Views: 9531

Re: Problems with C-QUARK standalone

Unfortunately, no difference at all.
by skyto
Wed Jun 30, 2021 8:28 am
Forum: Main Forum
Topic: Problems with C-QUARK standalone
Replies: 11
Views: 9531

Re: Problems with C-QUARK standalone

Cleaning working directories didn't help. I think i've already done this. Running DeepMSA manually is very hard and complicated as i can see, because readme-file contains only one command (it gives expected result), while C-QUARK invokes dozens of them.
by skyto
Tue Jun 29, 2021 8:41 am
Forum: Main Forum
Topic: Problems with C-QUARK standalone
Replies: 11
Views: 9531

Problems with C-QUARK standalone

Hello! I have installed C-QUARK on the fresh OS (Ubuntu 20.04.1) and tried to satisfy all the dependencies it has. Nevertheless it still produce many errors while running and doesn't produce any result. I downloaded and checked libraries and C-QUARK itself two times. Some errors from example run are...