Search found 2 matches

by anandksrao
Sun Nov 28, 2021 3:33 pm
Forum: Main Forum
Topic: parsing TM-align output to report protein domain PAV and coords
Replies: 3
Views: 2359

Re: parsing TM-align output to report protein domain PAV and coords

Thank you for your explanations and quick response, despite being the long weekend. I appreciate your help _/\_ Let me share 2 more details: 1. It would be easier for me to parse the TM-score from the tabular outtut than the full output with the FASTA alignment etc. Tabular output files are way smal...
by anandksrao
Thu Nov 25, 2021 2:30 pm
Forum: Main Forum
Topic: parsing TM-align output to report protein domain PAV and coords
Replies: 3
Views: 2359

parsing TM-align output to report protein domain PAV and coords

Greetings! I have 7 unique query PDBs for my protein domain of interest, downloaded from RCSB, but manually trimmed down to just Pfam-defined domain start-stop coords (these7 trimmed PDBs superpose very well, checked using CHIMERA) I also have ~30K PDB files, computationally predicted structures, on...