Search found 94 matches

by jlspzw
Mon Nov 28, 2022 5:08 pm
Forum: Main Forum
Topic: Cannot use QUARK and C-QUARK
Replies: 3
Views: 130

Re: Cannot use QUARK and C-QUARK

Dear user,

Please let us know your job ids of QUARK and C-QUARK. if possible, also give us the email you used for submitting jobs.

Best
IT Team
by jlspzw
Mon Nov 28, 2022 5:06 pm
Forum: Main Forum
Topic: Specifying residues
Replies: 1
Views: 126

Re: Specifying residues

Dear use,

We support you using a specific template, however, is not sported with fixing specific residues.

Best
IT team
by jlspzw
Wed Nov 23, 2022 3:50 pm
Forum: Main Forum
Topic: No results after 5 days
Replies: 3
Views: 240

Re: No results after 5 days

Dear user,

The IT team has saw your request, and you should able to re-submit.

Best
IT Team
by jlspzw
Mon Nov 21, 2022 2:42 pm
Forum: Main Forum
Topic: No results after 5 days
Replies: 3
Views: 240

Re: No results after 5 days

Dear user,

We didn't see any sequence in the data folder you provided, so could you first try to re-submit the sequence?

If you have an issue with re-submission, you can send the email with your former jobid to yangzhanglab@umich.edu

Best
IT Team
by jlspzw
Sat Nov 19, 2022 1:01 pm
Forum: Main Forum
Topic: Edock computational time
Replies: 1
Views: 326

Re: Edock computational time

Dear user,

Based on our experience, edock will take hours to days, depending on the system.

Best
IT Team
by jlspzw
Sun Nov 13, 2022 10:17 am
Forum: Main Forum
Topic: [C-I-Tasser standalone] minor python fixes
Replies: 3
Views: 356

Re: [C-I-Tasser standalone] minor python fixes

BTW, we have new generation I-TASSER software that will be released soon, and we are now testing the issues. if you are interested in it, you can find it at https://zhanggroup.org/D-I-TASSER/download.html. we would appreciate that if you find any issues or give us any feedback.

Best
IT Team
by jlspzw
Fri Nov 11, 2022 2:42 am
Forum: Main Forum
Topic: [C-I-Tasser standalone] minor python fixes
Replies: 3
Views: 356

Re: [C-I-Tasser standalone] minor python fixes

Dear user,

Thanking for sharing your wonderful work. This will save a lot of other users working time. Greatly appreciate it!

Best
IT Team
by jlspzw
Thu Nov 10, 2022 3:09 am
Forum: Main Forum
Topic: How to analyze the COTH result?
Replies: 1
Views: 306

Re: How to analyze the COTH result?

Dear user, There are three sections on the COTH results page, 1 your input sequences 2 Top ten complex template alignments. Where each item has a detailed explanation at the bottom of this section. 3 COTH recombination models of the tertiary template with a quaternary framework. Let us know if you s...
by jlspzw
Wed Nov 02, 2022 2:08 am
Forum: Main Forum
Topic: Generaing seq.dat and seq.txt files with REMO
Replies: 3
Views: 477

Re: Generaing seq.dat and seq.txt files with REMO

Dear user,

you can change $dbname ="$libdir/nr/nr.filter"; to $dbname ="$libdir/nr/nr";


Best
IT team
by jlspzw
Tue Nov 01, 2022 11:13 am
Forum: Main Forum
Topic: Generaing seq.dat and seq.txt files with REMO
Replies: 3
Views: 477

Re: Generaing seq.dat and seq.txt files with REMO

Dear user, In mkseq.pl you need change the first serval lines $libdir ="$path"; #####Chainge to specify path $dbname ="$libdir/nr/nr.filter"; # The name of the BLAST data bank $ncbidir="$libdir/blast/bin"; # Where the NCBI legacy blast programs have been installed $exec...