Dear user,
You can try https://zhanggroup.org/DMFold/, put two copies of your monomer sequences, and then it is dimmer.
Best Regards
Wei Zheng
Search found 247 matches
- Wed Apr 17, 2024 4:26 pm
- Forum: Main Forum
- Topic: Homologous dimer modeling
- Replies: 2
- Views: 36
- Mon Apr 15, 2024 1:12 pm
- Forum: Main Forum
- Topic: DMFold Run_DeepMSA2.py error
- Replies: 3
- Views: 67469
Re: DMFold Run_DeepMSA2.py error
Dear user,
Your change is correct. Please let us know if you have any questions.
Best
Wei
Your change is correct. Please let us know if you have any questions.
Best
Wei
- Fri Apr 12, 2024 3:57 pm
- Forum: Main Forum
- Topic: DeepMSA2 and DMFold questions about DeepMSA2_noIMG.py
- Replies: 1
- Views: 26817
Re: DeepMSA2 and DMFold questions about DeepMSA2_noIMG.py
Dear user, DeepMSA2 doesn't contains aMSA, the readme file has some typo, we will delete it from readme. DeepMSA_IMG.py does not require aMSA. qMSA and dMSA is enough for next step. if you only have qMSA.hhb* dMSA.hhb* and do not have d/qMSA.jac* and others, DeepMSA_IMG.py will tell you no need to d...
- Sat Apr 06, 2024 1:09 pm
- Forum: Main Forum
- Topic: DMFold Run_DeepMSA2.py error
- Replies: 3
- Views: 67469
Re: DMFold Run_DeepMSA2.py error
Dear user,
You can check the config.py, see the dMSA_cpu setting, etc.
Please try to reduce the CPU number to see if memory can be reduced.
BTW how large is your memory on your Desktop, and how large are your sequences?
Best Regards
Wei Zheng
You can check the config.py, see the dMSA_cpu setting, etc.
Please try to reduce the CPU number to see if memory can be reduced.
BTW how large is your memory on your Desktop, and how large are your sequences?
Best Regards
Wei Zheng
- Wed Apr 03, 2024 12:41 pm
- Forum: Main Forum
- Topic: i-TASSER Ab initio FM
- Replies: 1
- Views: 51451
Re: i-TASSER Ab initio FM
Dear user, You are encouraged to use https://zhanggroup.org/DMFold/ or https://zhanggroup.org/D-I-TASSER/ servers. When using D-I-TASSER, please try to select those three options. Using large IMG/JGI metagenomic database to build MSA (additional one or two days maybe applied). Using AlphaFold2 dista...
- Sat Mar 30, 2024 2:27 pm
- Forum: Main Forum
- Topic: Concerns Regarding Delays with DMFold Protein-Protein Interaction Prediction Server
- Replies: 4
- Views: 49832
- Sat Mar 30, 2024 2:07 pm
- Forum: Main Forum
- Topic: Concerns Regarding Delays with DMFold Protein-Protein Interaction Prediction Server
- Replies: 4
- Views: 49832
Re: Concerns Regarding Delays with DMFold Protein-Protein Interaction Prediction Server
Dear user, We are currently suffering a large number of jobs submitted from the user community, which makes our server job delayed than expected. Please let us know your job ID or email used for submission. We are trying to process the server jobs and make them faster; it may take a couple of days. ...
- Wed Mar 27, 2024 8:27 am
- Forum: Main Forum
- Topic: dont get results from DeepMSA2
- Replies: 1
- Views: 35859
Re: dont get results from DeepMSA2
Dear user,
We have recently received a large number of jobs submitted to our server, so your job may take longer than expected. Your job is running now; we hope it can be completed in the next three days.
Best Regards
Wei Zheng
We have recently received a large number of jobs submitted to our server, so your job may take longer than expected. Your job is running now; we hope it can be completed in the next three days.
Best Regards
Wei Zheng
- Wed Mar 27, 2024 8:11 am
- Forum: Main Forum
- Topic: runtime error in DeepMSA 2.1
- Replies: 1
- Views: 36139
Re: runtime error in DeepMSA 2.1
Dear yang,
Please check if the memory you requested is enough or not.
Best Regards
Wei Zheng
Please check if the memory you requested is enough or not.
Best Regards
Wei Zheng
- Sun Mar 24, 2024 3:30 am
- Forum: Main Forum
- Topic: what do output colors indicate
- Replies: 3
- Views: 38975
Re: what do output colors indicate
Dear Maria,
In this case, Jsmol colors the structure from N (blue) to C (red) terminus with a rainbow scale.
Best Regards
Wei Zheng
In this case, Jsmol colors the structure from N (blue) to C (red) terminus with a rainbow scale.
Best Regards
Wei Zheng