Zhanglab forum

Dear user,

You should add the GO::parser to PERL5LIB (environment variable in your system) if you did not use cpan to manage your Perl module.

Best
IT Team

Dear user,

No problem. The file size statistic is based on our former databases. Since our databases are updated weekly, the current size has become larger than the former.

Best
Wei

Dear user,

You can test the solution of this ticket.
viewtopic.php?f=3&t=721&sid=8816cacda68 ... 74368469ed

Best
IT Team

Dear user, I guess you are pointing COACH. If so, you can check the references of the COACH server, which may give you more information about the methodology of the server. Jianyi Yang, Ambrish Roy, and Yang Zhang. Protein-ligand binding site recognition using complementary binding-specific substruc...

Dear user,

Please try this link https://zhanggroup.org/ftp/download/nr.tar.gz

Best
IT Team

Dear user,

D-I-TASSER can only handle protein monomers, and we will release the complex modeling server DMFold-Multimer soon.

Best
IT Team

Dear user,

Your results seem to have been auto-deleted. Unfortunately, we can not recovery them.

Thank you

Best
IT Team

Dear user, It is possible that two different runs of the I-TASSER method give you two different models, I-TASSER depends on the template library, and the library is kept updating so the results may differ, especially for those "hard" targets that model has low predicted confidence score. I...

Dear user, Since you set the threshold as 5A, so I guess there are no that much different decoys could be generated by this very high structure similarity threshold, we tested your target with 20A as threshold, the job id is https://zhanggroup.org/3DRobot/output/D001293/, so you can see we get 1000 ...

Dear user, Q1: TM-align will align two structures based on their real structure similarity, while TM-score will align them based on the residue order in those pdb files. If your case is the model and true structure that has the same residue index, then always use TM-score program to assess the model...