Search found 13 matches

by XiZhang
Sat May 04, 2024 2:25 am
Forum: Main Forum
Topic: ultiple PDB templates
Replies: 1
Views: 6656

Re: ultiple PDB templates

Dear user,

Thank you for using our web server. Unfortunately, the I-TASSER server can currently only accept one template.

Best regards,
Xi
by XiZhang
Fri May 03, 2024 3:29 am
Forum: Main Forum
Topic: CR-I-Tasser
Replies: 1
Views: 107374

Re: CR-I-Tasser

Dear user, CR-I-TASSER requires the map resolution to convert the structure to a simulated map, and then calculates the correlation with the background density map. There is a box provided for inputting the resolution. However, if you are unsure about the resolution value, a predictor within the pro...
by XiZhang
Fri May 03, 2024 3:14 am
Forum: Main Forum
Topic: CR-I-Tasser
Replies: 1
Views: 106022

Re: CR-I-Tasser

Dear user, The CR-I-TASSER for modeling multichain structures has not yet been released. You may want to consider submitting jobs for individual chains separately. Regarding the second question, please note that the database for the web server is up to date, whereas the standalone package is not. Th...
by XiZhang
Sun Dec 24, 2023 12:50 pm
Forum: Main Forum
Topic: Results not available from COACH server
Replies: 2
Views: 18514

Re: Results not available from COACH server

Dear user, I have manually reviewed your job, which seems to have encountered a delay, possibly due to a transition issue between the two computational clusters of the server's frontend and backend. I've transited files and resubmitted the job, and am hopeful that we'll get the results as soon as po...
by XiZhang
Mon Sep 11, 2023 9:03 pm
Forum: Main Forum
Topic: Useful information about the output of PEPPI
Replies: 0
Views: 103306

Useful information about the output of PEPPI

Dear users, Dr. Eric Bell, first author of the PEPPI, wrote the important information about the output of PEPPI. I post them here so that you could have a better understanding of various information in the PEPPI result page. ###########################################################################...
by XiZhang
Mon Sep 04, 2023 8:18 pm
Forum: Main Forum
Topic: Edock submission error
Replies: 1
Views: 26210

Re: Edock submission error

Dear user,

Thank you for using our server and reporting the bug. We have fixed it and you should be good to submit your job again.

Best,
Xi
by XiZhang
Thu Mar 09, 2023 4:27 am
Forum: Main Forum
Topic: DeepMSA error from CR-I-TASSER
Replies: 2
Views: 15603

Re: DeepMSA error from CR-I-TASSER

Hello Ning,

Could you send your query sequence to me (xizha@umich.edu) to have a test? You don't have to send the density map since this error happens in MSA step.

Best,
Xi
by XiZhang
Sun Mar 20, 2022 2:52 am
Forum: Main Forum
Topic: download_lib.pl - Script Issues
Replies: 3
Views: 3627

Re: download_lib.pl - Script Issues

Hello Andrew, Thank you so much for pointing out the bug. We have updated the download_lib.pl and now should work fine. Please re-download the package and find the updated script. Also please do not concern about "zhanglab.ccmd.med.umich.edu" vs "zhanggroup.org". You could run a ...
by XiZhang
Thu Mar 03, 2022 5:58 pm
Forum: Main Forum
Topic: COACH job still pending
Replies: 6
Views: 5617

Re: COACH job still pending

Hello Laura,

I have recovered your data manually (CH2099407290), please check. You should also be able to submit new job.

Best,
Xi
by XiZhang
Wed Feb 09, 2022 3:11 pm
Forum: Main Forum
Topic: COACH job submission error
Replies: 8
Views: 8296

Re: COACH job submission error

No problem! Happy to help!