Search found 240 matches
- Thu Mar 02, 2023 1:11 am
- Forum: Main Forum
- Topic: TM-align rotation matrix
- Replies: 5
- Views: 8476
Re: TM-align rotation matrix
Dear user, If so, you may use the -o option of TM-align/TM-score, then you can get the superposed structures (structure1 aligned to structure2), for example -o sup Then you will have sup sup_atm etc. files, load the sup_atm (maybe need to re-name it as sup_atm.pdb) by PyMOL, and then you will get th...
- Wed Mar 01, 2023 2:32 pm
- Forum: Main Forum
- Topic: How can I input multi-chain sequence as fasta?
- Replies: 5
- Views: 7433
Re: How can I input multi-chain sequence as fasta?
This server will be available after the paper is published.
If you have targets (should not be too much), you can paste them here, and we can manually do them for you.
If you have targets (should not be too much), you can paste them here, and we can manually do them for you.
- Sat Feb 25, 2023 2:07 am
- Forum: Main Forum
- Topic: 3DRobot Decoys
- Replies: 3
- Views: 6187
Re: 3DRobot Decoys
Dear user, I got your points, since you only get 443 decoys while you want to 1000, so I guess your program may not be correctly completed, could you check if the default hour 48 is enough for your case? you can set -hour 240 hours to see if things changed. you can see 8A is 2/5 range of 20A, 443 is...
- Sat Feb 25, 2023 1:59 am
- Forum: Main Forum
- Topic: TM-align rotation matrix
- Replies: 5
- Views: 8476
Re: TM-align rotation matrix
Dear user,
You can use -m matrix.txt to output the matrix.
Best
IT Team
You can use -m matrix.txt to output the matrix.
Best
IT Team
- Tue Feb 21, 2023 8:52 pm
- Forum: Main Forum
- Topic: 3DRobot Decoys
- Replies: 3
- Views: 6187
Re: 3DRobot Decoys
Dear user,
I am slightly confused. If you want 1000 decoys with RMSD<8A, then why not set the threshold as 8A?
Best
IT Team
I am slightly confused. If you want 1000 decoys with RMSD<8A, then why not set the threshold as 8A?
Best
IT Team
- Sun Feb 12, 2023 8:42 pm
- Forum: Main Forum
- Topic: I-TASSER Illegal division by zero during MUSTER
- Replies: 8
- Views: 10947
Re: I-TASSER Illegal division by zero during MUSTER
Dear Jim, We seem to find the issue of your case. Please find the attached updated main D-I-TASSER program. You can unzip the file and put the binary file dcasdpo4v2.1 to $pkgdir/I-TASSERmod/ (replace the old one), then re-run the main I-TASSER program, If you want to try to debug testing with the f...
- Mon Feb 06, 2023 3:51 pm
- Forum: Main Forum
- Topic: I-TASSER Illegal division by zero during MUSTER
- Replies: 8
- Views: 10947
Re: I-TASSER Illegal division by zero during MUSTER
Hi Jim,
Could you send me the input and output files you get for this case. I will check what's the issue.
You can either attach to this forum or send it to me by email (zhengwei@umich.edu)
BTW, for the DEP issue, please check if re-downloading the ITlib helps.
Best
IT Team
Could you send me the input and output files you get for this case. I will check what's the issue.
You can either attach to this forum or send it to me by email (zhengwei@umich.edu)
BTW, for the DEP issue, please check if re-downloading the ITlib helps.
Best
IT Team
- Sat Feb 04, 2023 10:27 pm
- Forum: Main Forum
- Topic: I-TASSER Illegal division by zero during MUSTER
- Replies: 8
- Views: 10947
Re: I-TASSER Illegal division by zero during MUSTER
Dear user, Please download the attached zip file for MUSTER and MUSTER-related programs. 1. unzip the zip files. you will get zal1 zal2 zal3 zal33, add permission by "chmod a+x zal1 zal2 zal3 zal33" 2. go to your I-TASSER/D-I-TASSER programs path, cd bin/MUSTER/bin, backup zal33 by "m...
- Fri Feb 03, 2023 5:30 pm
- Forum: Main Forum
- Topic: crash on biolip web site and a site at position 0
- Replies: 2
- Views: 9269
Re: crash on biolip web site and a site at position 0
Dear user,
Which link on the download page did you open?
I check the readme link at https://zhanggroup.org/BioLiP/download.html
It seems I didn't get any problem. The link is https://zhanggroup.org/BioLiP/download/readme.txt
Let me know if you find any issues.
Thank you.
Best
IT Team
Which link on the download page did you open?
I check the readme link at https://zhanggroup.org/BioLiP/download.html
It seems I didn't get any problem. The link is https://zhanggroup.org/BioLiP/download/readme.txt
Let me know if you find any issues.
Thank you.
Best
IT Team
- Mon Jan 30, 2023 8:28 pm
- Forum: Main Forum
- Topic: I-TASSER Internal server error
- Replies: 3
- Views: 6597
Re: I-TASSER Internal server error
Dear user,
The issue has been solved.
Best
IT Team
The issue has been solved.
Best
IT Team