Zhanglab forum

Dear user,

We have tested your examplesim_1A files, it seems to be no problem with the files itself.

Could you go to /tmp/fakher/examplesim_1A, and run ./cas_examplesim_1A and see what happen.

Thank you.

Best
IT Team

Dear user,

Please send me the files in folder /tmp/root/examplesim_1A, if you change to account 'fakher', then send me the files in /tmp/fakher/examplesim_1A

Best
IT Team

Dear user, After you run ./examplesim_1A, there should be a folder named examplesim_1A in /tmp/root/. It is simulation files, not the MUSTER program. If you can not find examplesim_1A, in /mnt/c/I-TASSER5.1/example/examplesim_1A script, there is a line in the last as '`rm -fr $work_dir`;' , please c...

Dear user, could you provide the version of I-TASSER program you use, the command you set and the additional distance file you use?

Best
IT Team

Dear user,

We fond now your job S739900 is pending one the queue, since your target is a large size protein, you could try https://zhanggroup.org/I-TASSER-MTD/, which the limitation is 3000AA.

Best
IT Team

Dear user,

Can you check the files in /tmp/root/examplesim_1A, you can send me the files in /tmp/root/examplesim_1A.

Best
IT Team

Dear user,

Thank you for the update,

please go to /mnt/c/I-TASSER5.1/example folder (your former test). There should be a script named 'examplesim_1A'. Please directly run (./examplesim_1A) this script to see what the output message is.

Best
IT Team

Dear user, We tested your example files and ran with your files as the start point and got the correct results. So the input files of this case for the I-TASSER simulation should be ready. We think you should have some issues with the simulation itself. I may want to check the following setting is c...

Dear user,

Can you change your parameters "-seqname seq " to "-seqname example " if your folder name is "example", and see if you can go though?

Best
IT Team

Dear user,

Thank you for your files, we are working on debugging the program and will let you know the issue ASAP.

Best
IT Team