Search found 247 matches

by jlspzw
Sat Jan 06, 2024 12:20 am
Forum: Main Forum
Topic: Compressed data of DeepMSA2 Database is corrupt
Replies: 2
Views: 42136

Re: Compressed data of DeepMSA2 Database is corrupt

Dear user, Thank you for reporting this issue, we have fixed the data source, and now you can re-download those two files by wget -c https://zhanggroup.org/ftp/data/JGIclust30/DB.fasta.ac.xz wget -c https://zhanggroup.org/ftp/data/JGIclust30/DB.fasta.ab.ssi.xz Let us know if you find any other issue...
by jlspzw
Fri Jan 05, 2024 10:31 am
Forum: Main Forum
Topic: No confirmation or reply mail
Replies: 14
Views: 79080

Re: No confirmation or reply mail

We have sent a personal email to meriemelfessikh@gmail.com with all your job ids
by jlspzw
Fri Jan 05, 2024 10:19 am
Forum: Main Forum
Topic: No confirmation or reply mail
Replies: 14
Views: 79080

Re: No confirmation or reply mail

Dear user,

Have you tried this link using your email?

https://zhanggroup.org/LOMETS/check.html

Best
IT Team
by jlspzw
Fri Jan 05, 2024 9:56 am
Forum: Main Forum
Topic: No confirmation or reply mail
Replies: 14
Views: 79080

Re: No confirmation or reply mail

what email address you have used?
by jlspzw
Fri Jan 05, 2024 9:54 am
Forum: Main Forum
Topic: Can I submit customed alignment for protein structure prediction?
Replies: 1
Views: 40068

Re: Can I submit customed alignment for protein structure prediction?

Dear user,

D-I-TASSER server using our huge metagenome sequence databases which can detect more homologous sequences than the usual MSA pipeline. So we didn't implement the customs MSA as input. We will consider it in the future.

Thank you.

Best Regards
IT Team
by jlspzw
Fri Dec 15, 2023 8:34 pm
Forum: Main Forum
Topic: FG-MD & EvoDesign Servers
Replies: 5
Views: 53905

Re: FG-MD & EvoDesign Servers

Dear user,

Could you let us know your job ids?

Best
IT Team
by jlspzw
Sun Dec 10, 2023 12:58 am
Forum: Main Forum
Topic: Unzip the "result.tar.bz2" file from CoFactor
Replies: 6
Views: 41455

Re: Unzip the "result.tar.bz2" file from CoFactor

Dear user, We have download your results *.bz2 from https://zhanggroup.org/COFACTOR/output/MCF12412/ and https://zhanggroup.org/COFACTOR/output/MCF12405/. It seems no problem when we uncompress the data. Please see if your compress/uncompress software has any issues dealing with the bz2 file. Thank ...
by jlspzw
Sat Dec 09, 2023 7:46 pm
Forum: Main Forum
Topic: Unzip the "result.tar.bz2" file from CoFactor
Replies: 6
Views: 41455

Re: Unzip the "result.tar.bz2" file from CoFactor

Dear user,

Please let us know your job id, so that we can check the original bz2 file.

Best
IT Team
by jlspzw
Tue Dec 05, 2023 8:21 pm
Forum: Main Forum
Topic: Inquiry Regarding Interpretation of Output Graphs from i_Tasser Deep Neural Network
Replies: 1
Views: 28459

Re: Inquiry Regarding Interpretation of Output Graphs from i_Tasser Deep Neural Network

Hi Daim, Thank you for using our software, D-I-TASSER. The figures you asked for are a contact map, distance map, and hydrogen binding network that is used to guide the D-I-TASSER folding simulation (structure prediction). Those spatial restraints are predicted by DeepPotential, AttentionPotential, ...
by jlspzw
Wed Nov 01, 2023 4:09 pm
Forum: Main Forum
Topic: Options for uploading a longer sequence to D-I-TASSER?
Replies: 1
Views: 40351

Re: Options for uploading a longer sequence to D-I-TASSER?

Dear user, Due to the resource limitation, we limited the sequence to 750AA current. Please find our pre-build model by D-I-TASSER for your target protein. https://zhanggroup.org/HPmod/data/Q9ULD8/result.zip. for your case, I think the C-terminal may not be that confident, you can put the C-terminal...