Zhanglab forum

Dear user, You can keep the existing init.xxx if they are not making any trouble. For your restraints, please put it to $datadir, and when you pass the parameters, I think you should just give the restraints name, like osm3_ranked_0_monomer.pdb directly without the path. you can see your issue file ...

Dear user,

You can try https://zhanggroup.org/D-I-TASSER/, and select the IMG and D-I-TASSER-AF2 in the advanced options sections.

Best
IT Team

Dear user,

Please see this viewtopic.php?f=3&t=721&p=1314&hilit=za ... 3bab#p1314

And try to download the zal* in my answer to see if the issue could be solved.

Best
IT Team

Dear user,

You can try our most cutting-edge method https://zhanggroup.org/D-I-TASSER/

Best
IT Team

Dear user,

You can first check if ../ITLIB/PDB/3ee1A1.pdb exists or not by "ls" command,
if this file does not exist, you may want to update/re-download the library to the newest version.

Best
IT Team.

Dear user, We have checked and tested your case. Please see our running output of you case. https://zhanggroup.org/COACH/output/coach_1.zip 1. COACH can only handle single-chain protein as input. While your input is a dimmer, please select either A chain or B chain from your Albumin_predock.pdb (see...

Dear user,

could you zip all your input files and attach them to the forum.

Best
IT Team

Dear user,

I-TASSER simulation may take a long time based on the length of your sequence.
The final file for modeling should be model1.pdb in your folder. You can check the README file in the I-TASSER suite package (but there is no instruction about the number of immediate files).

Best
IT Team

Dear user,

You should add the GO::parser to PERL5LIB (environment variable in your system) if you did not use cpan to manage your Perl module.

Best
IT Team

Dear user,

No problem. The file size statistic is based on our former databases. Since our databases are updated weekly, the current size has become larger than the former.

Best
Wei