Search found 40 matches

by robpearc
Wed May 05, 2021 11:34 pm
Forum: Main Forum
Topic: I-TASSER: Change default number (14) of independent runs
Replies: 2
Views: 351

Re: I-TASSER: Change default number (14) of independent runs

Hello, There is currently no command line option for modifying the number of simulation trajectories. However, these parameters can be modified by changing the parameters in the runI-TASSER.pl file between lines 1613-1629 in the "decide number of runs section", so it will require some more...
by robpearc
Wed May 05, 2021 4:39 am
Forum: Main Forum
Topic: Delay ModRefiner for 3D protein refinement
Replies: 3
Views: 226

Re: Delay ModRefiner for 3D protein refinement

It looks like M30440 has finished and is available at https://zhanglab.dcmb.med.umich.edu/Mod ... ut/M30440/. M30441 is currently in the queue waiting to run.
by robpearc
Wed May 05, 2021 4:36 am
Forum: Main Forum
Topic: Delay ModRefiner for protein dimer
Replies: 5
Views: 592

Re: Delay ModRefiner for protein dimer

Hello,

It looks like your job was just submitted and is currently in the queue. We are currently working on catching up on many jobs that were submitted since our web server failure, so there may be additional delays, but we are working on processing your request ASAP.

Thanks!
Robin
by robpearc
Wed May 05, 2021 4:34 am
Forum: Main Forum
Topic: IonCom issues
Replies: 5
Views: 466

Re: IonCom issues

Thank you for the notification. We are working on fixing the issue ASAP, which arose during our transition to our new web server.
by robpearc
Mon May 03, 2021 8:42 pm
Forum: Main Forum
Topic: Delay in I-TASSER and LOMETS server
Replies: 1
Views: 194

Re: Delay in I-TASSER and LOMETS server

Yes, we have been experiencing delays due to a hardware failure on our web server as well as some recent maintenance on our backend cluster. We are currently catching up with old jobs, and it looks like your modeling results have finished, but the biological function prediction is currently running....
by robpearc
Mon May 03, 2021 8:39 pm
Forum: Main Forum
Topic: Delay ModRefiner for 3D protein refinement
Replies: 3
Views: 226

Re: Delay ModRefiner for 3D protein refinement

Yes, ModRefiner was down due to server issues. It should be back up and running and catching up on older jobs. If you have your job id or email used for submission, I can check on the status for you.
by robpearc
Mon May 03, 2021 1:41 am
Forum: Main Forum
Topic: I-TASSER: bzip2: Can't open input file rep*.tra: No such file or directory.
Replies: 3
Views: 377

Re: I-TASSER: bzip2: Can't open input file rep*.tra: No such file or directory.

The error appears to be due to the I-TASSER folding simulations failing to generate the structure decoy files (rep*.tra), although the exact error for this isn't apparent from the output. If you zip your data directory and send it to robpearc@umich.edu, I will look at the issue further.
by robpearc
Sun May 02, 2021 6:01 pm
Forum: Main Forum
Topic: Delay ModRefiner for protein dimer
Replies: 5
Views: 592

Re: Delay ModRefiner for protein dimer

We apologize for the delay. If you have your job id or email used for submission, I will check on the status for you.
by robpearc
Sun May 02, 2021 5:53 pm
Forum: Main Forum
Topic: Delay in processing the results
Replies: 1
Views: 210

Re: Delay in processing the results

Thank you for the post, we are currently experiencing delays due to maintenance on the backend server, which should be completed by Monday. We apologize for the inconvenience, and will process your job as soon as everything is running again.