Zhanglab forum

Hi Jim,

Could you send me the input and output files you get for this case. I will check what's the issue.

You can either attach to this forum or send it to me by email (zhengwei@umich.edu)

BTW, for the DEP issue, please check if re-downloading the ITlib helps.

Best
IT Team

Dear user, Please download the attached zip file for MUSTER and MUSTER-related programs. 1. unzip the zip files. you will get zal1 zal2 zal3 zal33, add permission by "chmod a+x zal1 zal2 zal3 zal33" 2. go to your I-TASSER/D-I-TASSER programs path, cd bin/MUSTER/bin, backup zal33 by "m...

Dear user,

Which link on the download page did you open?

I check the readme link at https://zhanggroup.org/BioLiP/download.html

It seems I didn't get any problem. The link is https://zhanggroup.org/BioLiP/download/readme.txt

Let me know if you find any issues.

Thank you.

Best
IT Team

Dear user,

The issue has been solved.

Best
IT Team

Dear user,

We are working on it and will let you know if it is solved. Thank you for letting us know it.

Best
IT Team

Dear user,

Could you check how many lines are in your $ITlib/PDB/list file? You can use "more $ITlib/PDB/list" see the first line. Here $ITlib is your I-TASSER library path.

BTW, is that package I-TASSER? C-I-TASSER or D-I-TASSER?

Thank you.

Best
IT Team

Dear user,

Thank you for using our tools. We are glad to hear you found the issue. Let us know if you need any help in the future.

Best
IT Team

Dear user,

We have contacted the author of DeepFold, and all the related issues, you can report to him if you don't get feedback from him here.
His email address is robpearc@umich.edu .

Thank you.

Best
IT Team

Dear user,

We have temporarily changed it to 10, so you can try it if it works. For very short peptides (<10AA), we are not sure if it could get a reasonable result since we do not have any benchmark on it.

Best
IT Team

Dear user,

We are working on it, and the package will be available after our manuscript has been published.

Best
IT Team