Search found 157 matches

by xiaogenz
Wed Nov 03, 2021 3:16 am
Forum: Main Forum
Topic: Modelling trimers
Replies: 1
Views: 1207

Re: Modelling trimers

Currently, we just have a method for dimer modeling (https://zhanggroup.org/TACOS/). You can try to use Rosetta symmetry docking. You can also use Modeller if you have good trimer templates.
by xiaogenz
Mon Nov 01, 2021 6:07 pm
Forum: Main Forum
Topic: Job Stuck running for over 10 days Job I.D. is S651844
Replies: 1
Views: 1177

Re: Job Stuck running for over 10 days Job I.D. is S651844

Sorry, there is a problem with the data transition between two clusters. I have manually copy the data and we are fixing the problem now.
Here is the link to the results: https://zhanggroup.org/I-TASSER/output/S651844/
by xiaogenz
Fri Oct 29, 2021 6:23 pm
Forum: Main Forum
Topic: Job stuck?
Replies: 6
Views: 2284

Re: Job stuck?

I have manually copied the data to the cluster. Here is the link to your results https://zhanggroup.org/I-TASSER/output/S650938/
by xiaogenz
Fri Oct 29, 2021 6:08 pm
Forum: Main Forum
Topic: Job stuck?
Replies: 6
Views: 2284

Re: Job stuck?

Sorry, there is a problem with the data transition between two clusters. Here are the final models. Please let me know if you need more information.
by xiaogenz
Thu Oct 28, 2021 6:37 pm
Forum: Main Forum
Topic: Library installation error
Replies: 12
Views: 8570

Re: Library installation error

Please download the newest "ligand.tar.bz2" updated on Oct 27, 2021. I have tested it and successfully uncompressed it. If the problem still persists, please manually download "ligand.tar.bz2" at "http://zhanglab.dcmb.med.umich.edu/BioLiP/download/COACH_lib/COFACTOR/ligand.t...
by xiaogenz
Tue Oct 26, 2021 1:14 am
Forum: Main Forum
Topic: Job stuck?
Replies: 6
Views: 2284

Re: Job stuck?

The job is still running. It is expected to be finished soon as the simulation step is running now.
by xiaogenz
Wed Oct 20, 2021 12:34 am
Forum: Main Forum
Topic: EDock result
Replies: 3
Views: 1584

Re: EDock result

Here is the data.
by xiaogenz
Mon Oct 18, 2021 7:36 pm
Forum: Main Forum
Topic: Unable to login to download I-TASSER Suite
Replies: 2
Views: 1806

Re: Unable to login to download I-TASSER Suite

Sorry! I have contacted our administrator to check this problem.
You can also try to download our C-I-TASSER suite, which is an improved version of I-TASSER using deep-learning predicted contact.
https://zhanggroup.org/C-I-TASSER/
by xiaogenz
Mon Oct 18, 2021 7:29 pm
Forum: Main Forum
Topic: Generate Protein
Replies: 8
Views: 8549

Re: Generate Protein

Is it really beneficial ? Yes, absolutely. You can try to use our newest version D-I-TASSER, which uses deep-learning restraints to guide the modeling. https://zhanggroup.org/D-I-TASSER/ You can also use our deep-learning based platform I-TASSER-MD for the multi-domain protein structure prediction....
by xiaogenz
Sat Oct 16, 2021 6:40 pm
Forum: Main Forum
Topic: Delay ? Please help. Deadline issue
Replies: 1
Views: 1316

Re: Delay ? Please help. Deadline issue

Here are the final models. Please let me know if you need more data.