Zhanglab forum

Dear user,

Our server has some issues with the storage due to the large amount jobs, we are working on moving data to new storage, which will take some time. Thank you for your patience.

Best
IT Team

Dear user, It is possible that I-TASSER and C-I-TASSER do not give five models. normally model less than five (for example, only 1) means all decoys from the simulation have a similar structure then going to 1 cluster, indicates your model normally has high quality. you can find explanation here htt...

Dear user,

We currently have a job overload, I just changed your job priority.

It should be complete in around 1 week.

Best
IT Team

Hi Rich, Your former post looks good. The default C-I-TASSER package is designed for running all jobs in one CPU sequentially. For contact prediction parts, threading parts, and simulation parts, you can run them parallelly if you could modify the code based on your computer system. The most time-co...

Dear user,

Our staff finds you posted this question by email, so he will answer your question by email. Thank you.

Best
IT Team

Dear user, your question has been addressed by email.

Dear user,

FASPR can only add a side-chain to the protein target.

Best
IT Team

Dear user, If so, you may use the -o option of TM-align/TM-score, then you can get the superposed structures (structure1 aligned to structure2), for example -o sup Then you will have sup sup_atm etc. files, load the sup_atm (maybe need to re-name it as sup_atm.pdb) by PyMOL, and then you will get th...

This server will be available after the paper is published.
If you have targets (should not be too much), you can paste them here, and we can manually do them for you.

Dear user, I got your points, since you only get 443 decoys while you want to 1000, so I guess your program may not be correctly completed, could you check if the default hour 48 is enough for your case? you can set -hour 240 hours to see if things changed. you can see 8A is 2/5 range of 20A, 443 is...