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Library Download Failure

Posted: Thu Jun 10, 2021 6:25 am
by Glinttsd
In oder to get COACH running, we were trying to download the template library (C-I-TASSER-1.0).
But the download process (via download_lib.pl file) was terminated and it said : System call failed: at ./download_lib.pl line 108..
We assume that the problem lies in the network connection from the server by checking download_lib.pl file.

Re: Library Download Failure

Posted: Thu Jun 10, 2021 5:28 pm
by xiaogenz
You can change the line 102 in "download_lib.pl" to " system("wget -o log -c http://zhanglab.dcmb.med.umich.edu/library/nr.tar.gz") == 0 or die "System call failed: $!"; ". It will be working after the modification.

Re: Library Download Failure

Posted: Fri Jun 11, 2021 4:52 am
by fatin_izz
hi, I think I have the same problem but on different line when runnning the download_lib.pl script. It shows:
"Can't exec "wget": No such file or directory at ./download_lib.pl line 214.
System call failed: No such file or directory at ./download_lib.pl line 214.".

line 214: "system("wget -o log https://zhanglab.ccmb.med.umich.edu/library/") == 0 or die "System call failed: $!";"

Re: Library Download Failure

Posted: Fri Jun 11, 2021 4:29 pm
by xiaogenz
Please use the new script wich can be downloaded from https://zhanglab.dcmb.med.umich.edu/Bio ... lib_new.pl