How to directly convert I-TASSER output into .pdb files

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DavidB256
Posts: 4
Joined: Fri Jun 11, 2021 4:01 pm

How to directly convert I-TASSER output into .pdb files

Post by DavidB256 »

Hello! I am using I-TASSER downloaded onto my machine. I am only interested in the .pdb file output from I-TASSER. Is there an easier way to create .pdb from the seq.ss and exp.dat output files than running all of file2html.py? file2html.py gives me IndexError errors. Thanks!!
xiaogenz
Posts: 71
Joined: Sun Apr 25, 2021 12:02 am

Re: How to directly convert I-TASSER output into .pdb files

Post by xiaogenz »

seq.ss and exp.dat are the results of secondary structure prediction and solvent accessibility prediction, respectively. These two files did not include any atom coordinates. They cannot be converted to pdb files. But you can use the pymol script to show these results in the 3D model.
jlspzw
Posts: 31
Joined: Tue May 04, 2021 5:04 pm

Re: How to directly convert I-TASSER output into .pdb files

Post by jlspzw »

you can check the model*.pdb files, those are the final pdb files of I-TASSER
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