C-Quark local installation processing time for 30 amino acid peptide?

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multipole
Posts: 2
Joined: Wed Jul 07, 2021 11:33 pm

C-Quark local installation processing time for 30 amino acid peptide?

Post by multipole »

Due tu some problems with online version of Quark server, I decided to install C-Quark locally.

Downloading library lasts for hours (100GB for now, and counting..)
I wonder is it worth waiting and investing time to run it localy..

How much time it will need to run 30 amino acid sequence on ordinary laptop with 8 intel i5 cores?

Thanks
jlspzw
Posts: 31
Joined: Tue May 04, 2021 5:04 pm

Re: C-Quark local installation processing time for 30 amino acid peptide?

Post by jlspzw »

It may takes less than one day for a protein with only 30 amino acid I believe. The library is slightly big, but it worth using C_QUARK than QUARK, C-UQARK performance is much better than QUARK
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