Query regarding interaction analysis

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quazitaushif
Posts: 1
Joined: Fri Oct 14, 2022 9:02 pm

Query regarding interaction analysis

Post by quazitaushif »

How can I predict interaction of my predicted protein with other proteins (possible binding) on i-Tasser ?
jlspzw
Posts: 94
Joined: Tue May 04, 2021 5:04 pm

Re: Query regarding interaction analysis

Post by jlspzw »

Dear user,

If you know the second protein that you want to check if it will bind to your target sequence,

you can try any of the following
https://zhanggroup.org/spring/
https://zhanggroup.org/COTH/
https://zhanggroup.org/Threpp/
https://zhanggroup.org/PEPPI/

if you do not know the potentially second sequence, you may try STRING database
https://string-db.org/

Best
IT team
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