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Wrong Protein Model

Posted: Mon May 08, 2023 5:51 am
by akhan.mshcb10asab
I have submitted a protein sequence for protein modelling, job id S734693. The structure I get is wrong as beta sheets and alpha helices have switched places in model 1. I resubmitted the sequence but again it gives the same structure. kindly delete the results of my submitted sequence from your server and remodel it. Thank you.

Re: Wrong Protein Model

Posted: Sun May 28, 2023 8:08 am
by akhan.mshcb10asab
I cannot find any portal other than this one on the website where i submitted sequence. I again submitted sequence and again I am getting wrong protein model. Kindly guide me what shall I do.

Re: Wrong Protein Model

Posted: Wed May 31, 2023 8:52 pm
by jlspzw
Dear user,

I can't find your job S734693, do you have any available results or jobid?

Also, we recommend you try our new servers

https://zhanggroup.org/C-I-TASSER/
https://zhanggroup.org/D-I-TASSER/

they are more accurate than old I-TASSER server

Best
IT Team

Re: Wrong Protein Model

Posted: Fri Jun 09, 2023 6:23 am
by akhan.mshcb10asab
My job ID is S739900 kindly check this please. Also I tried D-I-Tasser and C-I-Tasser but they say sequence too long maximum residue size is 750 my protein sequence is of 933 residues.

Re: Wrong Protein Model

Posted: Fri Jun 09, 2023 9:03 pm
by jlspzw
Dear user,

We fond now your job S739900 is pending one the queue, since your target is a large size protein, you could try https://zhanggroup.org/I-TASSER-MTD/, which the limitation is 3000AA.

Best
IT Team